Variant report

Variant	rs16858892
Chromosome Location	chr3:146501943-146501944
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1124628	1.00[ASN][1000 genomes]
rs1553628	1.00[ASN][1000 genomes]
rs1606175	1.00[ASN][1000 genomes]
rs16858913	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17371950	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17752579	1.00[ASN][1000 genomes]
rs1991716	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159170	1.00[ASN][1000 genomes]
rs73159193	1.00[ASN][1000 genomes]
rs73159198	1.00[ASN][1000 genomes]
rs73160903	1.00[ASN][1000 genomes]
rs73160904	1.00[ASN][1000 genomes]
rs73160905	1.00[ASN][1000 genomes]
rs73160906	1.00[ASN][1000 genomes]
rs73160909	1.00[ASN][1000 genomes]
rs73160912	1.00[ASN][1000 genomes]
rs73160972	1.00[ASN][1000 genomes]
rs73160973	1.00[ASN][1000 genomes]
rs73160976	1.00[ASN][1000 genomes]
rs73160977	1.00[ASN][1000 genomes]
rs73160981	1.00[ASN][1000 genomes]
rs73160985	1.00[ASN][1000 genomes]
rs73160988	1.00[ASN][1000 genomes]
rs73162818	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73162823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73162833	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1007875	chr3:146401461-146776618	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877624	chr3:146414837-146536741	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998040	chr3:146416916-146729962	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536760	chr3:146416916-146729962	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1001931	chr3:146419061-146745361	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv877625	chr3:146461435-146521978	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146499200-146503400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:146499600-146502800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:146500600-146502000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:146501200-146502000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:146501400-146503400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:146501600-146502000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:146501600-146502600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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