Variant report

Variant	rs73160977
Chromosome Location	chr3:146427796-146427797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1124628	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553628	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606175	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858892	1.00[ASN][1000 genomes]
rs16858913	1.00[ASN][1000 genomes]
rs17371950	1.00[ASN][1000 genomes]
rs17752579	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991716	1.00[ASN][1000 genomes]
rs73159170	1.00[ASN][1000 genomes]
rs73159193	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159198	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160903	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160904	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160905	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160906	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160909	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160912	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160972	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160973	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160976	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160981	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160985	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160988	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160999	0.97[EUR][1000 genomes]
rs73162818	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73162823	1.00[ASN][1000 genomes]
rs73162833	1.00[ASN][1000 genomes]
rs9289721	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1007875	chr3:146401461-146776618	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877624	chr3:146414837-146536741	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998040	chr3:146416916-146729962	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536760	chr3:146416916-146729962	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1001931	chr3:146419061-146745361	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3347390	chr3:146427323-146428419	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3462643	chr3:146427356-146428421	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3462644	chr3:146427411-146428357	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv19094	chr3:146427474-146428257	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3462645	chr3:146427478-146428285	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146420200-146432400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:146427200-146427800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:146427200-146427800	Enhancers	HSMM	muscle
4	chr3:146427200-146428000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:146427200-146428600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:146427600-146430000	Weak transcription	NHDF-Ad	bronchial

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