Variant report

Variant	rs17371950
Chromosome Location	chr3:146529539-146529540
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1124628	1.00[ASN][1000 genomes]
rs1553628	1.00[ASN][1000 genomes]
rs1606175	1.00[ASN][1000 genomes]
rs16858892	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17752579	1.00[ASN][1000 genomes]
rs1991716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159170	1.00[ASN][1000 genomes]
rs73159193	1.00[ASN][1000 genomes]
rs73159198	1.00[ASN][1000 genomes]
rs73160903	1.00[ASN][1000 genomes]
rs73160904	1.00[ASN][1000 genomes]
rs73160905	1.00[ASN][1000 genomes]
rs73160906	1.00[ASN][1000 genomes]
rs73160909	1.00[ASN][1000 genomes]
rs73160912	1.00[ASN][1000 genomes]
rs73160972	1.00[ASN][1000 genomes]
rs73160973	1.00[ASN][1000 genomes]
rs73160976	1.00[ASN][1000 genomes]
rs73160977	1.00[ASN][1000 genomes]
rs73160981	1.00[ASN][1000 genomes]
rs73160985	1.00[ASN][1000 genomes]
rs73160988	1.00[ASN][1000 genomes]
rs73162818	1.00[ASN][1000 genomes]
rs73162823	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73162833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1007875	chr3:146401461-146776618	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877624	chr3:146414837-146536741	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998040	chr3:146416916-146729962	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536760	chr3:146416916-146729962	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1001931	chr3:146419061-146745361	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1005776	chr3:146511378-146599221	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv460881	chr3:146512753-146569037	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv591962	chr3:146512753-146569037	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146519600-146532800	Weak transcription	NHLF	lung
2	chr3:146522400-146531200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:146523000-146531000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:146523000-146531000	Weak transcription	NHDF-Ad	bronchial
5	chr3:146528000-146534200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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