Variant report

Variant	rs16859842
Chromosome Location	chr4:46998410-46998411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10517171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs10517172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs10517173	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10517174	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10517175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11727160	0.86[EUR][1000 genomes]
rs11727163	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11729000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11729961	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11731576	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs11732239	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11732398	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12512719	0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16851647	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16859823	0.86[AMR][1000 genomes]
rs16859826	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2036940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2280072	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3762607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3762608	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3762610	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4695182	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs4695183	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs4695184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs57314699	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs59115556	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs59481829	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59675437	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61409453	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73813760	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73813761	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73813771	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73813772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73813773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470031	chr4:46982218-47006399	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46997600-47013200	Weak transcription	Right Ventricle	heart
2	chr4:46998400-47000000	Enhancers	Fetal Heart	heart

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