Variant report

Variant	rs4695182
Chromosome Location	chr4:46989398-46989399
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10517171	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs10517172	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs10517173	0.97[ASN][1000 genomes]
rs10517174	0.82[CEU][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.83[ASN][1000 genomes]
rs10517175	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs11727160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727163	1.00[ASN][1000 genomes]
rs11729000	0.84[EUR][1000 genomes]
rs11729961	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731576	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs11732239	0.80[ASN][1000 genomes]
rs11732398	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs12512719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16851647	0.83[ASN][1000 genomes]
rs16859823	0.83[ASN][1000 genomes]
rs16859826	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs16859842	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs2036940	0.82[CEU][hapmap]
rs2280072	0.81[ASN][1000 genomes]
rs2280075	0.89[CHB][hapmap]
rs3762607	0.82[CEU][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs3762608	0.86[EUR][1000 genomes]
rs3762610	0.89[EUR][1000 genomes]
rs3762611	0.82[CEU][hapmap];0.96[GIH][hapmap];0.84[EUR][1000 genomes]
rs3792208	0.89[CHB][hapmap]
rs3792210	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4695183	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs4695184	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs57314699	0.83[ASN][1000 genomes]
rs59115556	0.83[ASN][1000 genomes]
rs59481829	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59675437	0.83[ASN][1000 genomes]
rs61409453	0.83[ASN][1000 genomes]
rs6856763	0.89[CHB][hapmap]
rs73813760	0.83[ASN][1000 genomes]
rs73813761	0.83[ASN][1000 genomes]
rs73813771	0.84[EUR][1000 genomes]
rs73813772	0.84[EUR][1000 genomes]
rs73813773	0.84[EUR][1000 genomes]
rs7666145	0.89[CHB][hapmap]
rs9291300	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470031	chr4:46982218-47006399	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
2	esv3379226	chr4:46989154-46989514	Bivalent Enhancer Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46987000-46990800	Weak transcription	Fetal Brain Male	brain
2	chr4:46988600-46990000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:46989000-46989400	Enhancers	Brain Anterior Caudate	brain
4	chr4:46989000-46989800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr4:46989200-46990000	Active TSS	Brain Angular Gyrus	brain

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