Variant report

Variant	rs11729961
Chromosome Location	chr4:47002177-47002178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10517171	0.82[CEU][hapmap]
rs10517172	0.82[CEU][hapmap]
rs10517174	0.82[CEU][hapmap];0.90[GIH][hapmap]
rs10517175	0.82[CEU][hapmap]
rs11727160	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11729000	0.88[EUR][1000 genomes]
rs11731576	0.82[CEU][hapmap]
rs12512719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13112698	0.84[JPT][hapmap]
rs16859826	0.82[CEU][hapmap]
rs16859842	0.82[CEU][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2036940	0.82[CEU][hapmap]
rs2280075	0.89[CHB][hapmap]
rs3762607	0.82[CEU][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs3762608	0.86[EUR][1000 genomes]
rs3762610	0.89[EUR][1000 genomes]
rs3762611	0.82[CEU][hapmap];0.96[GIH][hapmap];0.88[EUR][1000 genomes]
rs3792208	0.89[CHB][hapmap]
rs3792210	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4695182	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4695183	0.82[CEU][hapmap]
rs4695184	0.82[CEU][hapmap]
rs4695186	0.87[ASN][1000 genomes]
rs59481829	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856763	0.89[CHB][hapmap]
rs73247618	0.82[ASN][1000 genomes]
rs73247619	0.82[ASN][1000 genomes]
rs73247622	0.86[ASN][1000 genomes]
rs73813771	0.88[EUR][1000 genomes]
rs73813772	0.88[EUR][1000 genomes]
rs73813773	0.88[EUR][1000 genomes]
rs7666145	0.89[CHB][hapmap]
rs9291300	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470031	chr4:46982218-47006399	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46997600-47013200	Weak transcription	Right Ventricle	heart
2	chr4:47001000-47003000	Enhancers	Fetal Heart	heart

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