Variant report

Variant	rs59481829
Chromosome Location	chr4:47002475-47002476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11727160	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11729000	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11729961	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12512719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859842	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3762607	0.86[EUR][1000 genomes]
rs3762608	0.86[EUR][1000 genomes]
rs3762610	0.89[EUR][1000 genomes]
rs3762611	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3792210	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4695182	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4695186	0.91[ASN][1000 genomes]
rs73247618	0.85[ASN][1000 genomes]
rs73247619	0.85[ASN][1000 genomes]
rs73247622	0.89[ASN][1000 genomes]
rs73813771	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73813772	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73813773	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470031	chr4:46982218-47006399	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46997600-47013200	Weak transcription	Right Ventricle	heart
2	chr4:47001000-47003000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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