The 2.0 version of rSNPBase

Variant report

Variant rs16860500
Chromosome Location chr2:173338249-173338250
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:173321400-173356000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:173326400-173340400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
3 chr2:173327200-173353200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr2:173327400-173338600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr2:173327400-173345000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr2:173327800-173370800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr2:173328800-173339000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr2:173328800-173353400 Weak transcription Right Ventricle heart
9 chr2:173329400-173344400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr2:173329800-173371200 Weak transcription Hela-S3 cervix
11 chr2:173330200-173342200 Weak transcription Brain Substantia Nigra brain
12 chr2:173330200-173345600 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr2:173330200-173350400 Weak transcription Primary B cells from cord blood blood
14 chr2:173330400-173339400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr2:173330400-173360400 Weak transcription Small Intestine intestine
16 chr2:173330600-173339000 Weak transcription Fetal Muscle Trunk muscle
17 chr2:173330600-173339400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr2:173330600-173339600 Weak transcription Brain Inferior Temporal Lobe brain
19 chr2:173330600-173344600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr2:173330600-173344800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr2:173330600-173344800 Weak transcription Adipose Nuclei Adipose
22 chr2:173330600-173345000 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr2:173330600-173345000 Weak transcription NH-A brain
24 chr2:173330600-173345200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr2:173330600-173345600 Weak transcription Brain Hippocampus Middle brain
26 chr2:173330600-173346400 Strong transcription H1 Cell Line embryonic stem cell
27 chr2:173330600-173351400 Weak transcription Psoas Muscle Psoas
28 chr2:173330600-173351400 Weak transcription Rectal Smooth Muscle rectum
29 chr2:173330600-173351600 Weak transcription Brain Anterior Caudate brain
30 chr2:173330600-173352400 Weak transcription Placenta Amnion Placenta Amnion
31 chr2:173330600-173352600 Weak transcription ES-WA7 Cell Line embryonic stem cell
32 chr2:173330600-173352600 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr2:173330600-173353200 Weak transcription iPS-15b Cell Line embryonic stem cell
34 chr2:173330600-173353200 Weak transcription Aorta Aorta
35 chr2:173330600-173353400 Weak transcription Fetal Stomach stomach
36 chr2:173330600-173371400 Strong transcription HUES64 Cell Line embryonic stem cell
37 chr2:173330600-173372200 Strong transcription iPS-20b Cell Line embryonic stem cell
38 chr2:173330600-173373200 Strong transcription NHEK skin
39 chr2:173330600-173373400 Strong transcription HUES48 Cell Line embryonic stem cell
40 chr2:173330600-173373400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr2:173330600-173373600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr2:173330600-173374200 Weak transcription Stomach Mucosa stomach
43 chr2:173330800-173345400 Weak transcription NHLF lung
44 chr2:173330800-173348200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr2:173331000-173341200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr2:173331000-173344800 Weak transcription NHDF-Ad bronchial
47 chr2:173331000-173346600 Weak transcription Brain Cingulate Gyrus brain
48 chr2:173331000-173348400 Strong transcription Primary T regulatory cells fromperipheralblood blood
49 chr2:173331000-173370000 Strong transcription Rectal Mucosa Donor 29 rectum
50 chr2:173331000-173373200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015