The 2.0 version of rSNPBase

Variant report

Variant rs16860566
Chromosome Location chr2:173357423-173357424
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:173327800-173370800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr2:173329800-173371200 Weak transcription Hela-S3 cervix
3 chr2:173330400-173360400 Weak transcription Small Intestine intestine
4 chr2:173330600-173371400 Strong transcription HUES64 Cell Line embryonic stem cell
5 chr2:173330600-173372200 Strong transcription iPS-20b Cell Line embryonic stem cell
6 chr2:173330600-173373200 Strong transcription NHEK skin
7 chr2:173330600-173373400 Strong transcription HUES48 Cell Line embryonic stem cell
8 chr2:173330600-173373400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr2:173330600-173373600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr2:173330600-173374200 Weak transcription Stomach Mucosa stomach
11 chr2:173331000-173370000 Strong transcription Rectal Mucosa Donor 29 rectum
12 chr2:173331000-173373200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr2:173331000-173373400 Strong transcription Breast Myoepithelial Primary Cells Breast
14 chr2:173331000-173373800 Strong transcription HMEC breast
15 chr2:173331200-173372000 Strong transcription iPS-18 Cell Line embryonic stem cell
16 chr2:173331400-173370200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr2:173337800-173360200 Strong transcription Fetal Thymus thymus
18 chr2:173343000-173360200 Strong transcription Sigmoid Colon Sigmoid Colon
19 chr2:173345800-173359800 Weak transcription Placenta Placenta
20 chr2:173345800-173360800 Strong transcription Duodenum Mucosa Duodenum
21 chr2:173346000-173360800 Strong transcription HSMM muscle
22 chr2:173346000-173370200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr2:173346000-173370200 Strong transcription HUES6 Cell Line embryonic stem cell
24 chr2:173346000-173370600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr2:173346400-173371400 Weak transcription NHLF lung
26 chr2:173346600-173357600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr2:173347000-173367200 Strong transcription Cortex derived primary cultured neurospheres brain
28 chr2:173347400-173368600 Weak transcription Fetal Adrenal Gland Adrenal Gland
29 chr2:173347800-173371600 Weak transcription Fetal Brain Male brain
30 chr2:173347800-173376200 Weak transcription Fetal Heart heart
31 chr2:173349200-173358000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr2:173349400-173360200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
33 chr2:173349400-173360200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr2:173349400-173360800 Strong transcription Fetal Intestine Large intestine
35 chr2:173349400-173365200 Strong transcription H1 Cell Line embryonic stem cell
36 chr2:173349400-173370400 Strong transcription Rectal Mucosa Donor 31 rectum
37 chr2:173349800-173360000 Strong transcription Primary hematopoietic stem cells short term culture blood
38 chr2:173350000-173360800 Weak transcription GM12878-XiMat blood
39 chr2:173350800-173359200 Strong transcription Thymus Thymus
40 chr2:173351000-173360800 Weak transcription Dnd41 blood
41 chr2:173351200-173357800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
42 chr2:173351200-173359400 Strong transcription ES-I3 Cell Line embryonic stem cell
43 chr2:173351200-173360400 Strong transcription Primary hematopoietic stem cells blood
44 chr2:173351200-173360800 Strong transcription H9 Cell Line embryonic stem cell
45 chr2:173351200-173367800 Strong transcription HSMMtube muscle
46 chr2:173351400-173360800 Strong transcription HUVEC blood vessel
47 chr2:173351800-173359000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr2:173352000-173357600 Strong transcription Skeletal Muscle Male skeletal muscle
49 chr2:173352000-173358600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr2:173352000-173371400 Weak transcription Fetal Brain Female brain

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Last update: Aug 31, 2015