The 2.0 version of rSNPBase

Variant report

Variant rs16860562
Chromosome Location chr2:173355669-173355670
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:173321400-173356000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:173327800-173370800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr2:173329800-173371200 Weak transcription Hela-S3 cervix
4 chr2:173330400-173360400 Weak transcription Small Intestine intestine
5 chr2:173330600-173371400 Strong transcription HUES64 Cell Line embryonic stem cell
6 chr2:173330600-173372200 Strong transcription iPS-20b Cell Line embryonic stem cell
7 chr2:173330600-173373200 Strong transcription NHEK skin
8 chr2:173330600-173373400 Strong transcription HUES48 Cell Line embryonic stem cell
9 chr2:173330600-173373400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr2:173330600-173373600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr2:173330600-173374200 Weak transcription Stomach Mucosa stomach
12 chr2:173331000-173370000 Strong transcription Rectal Mucosa Donor 29 rectum
13 chr2:173331000-173373200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr2:173331000-173373400 Strong transcription Breast Myoepithelial Primary Cells Breast
15 chr2:173331000-173373800 Strong transcription HMEC breast
16 chr2:173331200-173372000 Strong transcription iPS-18 Cell Line embryonic stem cell
17 chr2:173331400-173370200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr2:173337800-173360200 Strong transcription Fetal Thymus thymus
19 chr2:173343000-173360200 Strong transcription Sigmoid Colon Sigmoid Colon
20 chr2:173344000-173356000 Weak transcription Fetal Kidney kidney
21 chr2:173345800-173359800 Weak transcription Placenta Placenta
22 chr2:173345800-173360800 Strong transcription Duodenum Mucosa Duodenum
23 chr2:173346000-173360800 Strong transcription HSMM muscle
24 chr2:173346000-173370200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr2:173346000-173370200 Strong transcription HUES6 Cell Line embryonic stem cell
26 chr2:173346000-173370600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr2:173346400-173356000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr2:173346400-173371400 Weak transcription NHLF lung
29 chr2:173346600-173356000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr2:173346600-173356000 Weak transcription Brain Inferior Temporal Lobe brain
31 chr2:173346600-173357600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr2:173346800-173356000 Weak transcription Brain Cingulate Gyrus brain
33 chr2:173347000-173367200 Strong transcription Cortex derived primary cultured neurospheres brain
34 chr2:173347400-173368600 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr2:173347800-173371600 Weak transcription Fetal Brain Male brain
36 chr2:173347800-173376200 Weak transcription Fetal Heart heart
37 chr2:173349200-173356800 Strong transcription Primary T cells fromperipheralblood blood
38 chr2:173349200-173357400 Strong transcription Skeletal Muscle Female skeletal muscle
39 chr2:173349200-173358000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
40 chr2:173349400-173360200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
41 chr2:173349400-173360200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr2:173349400-173360800 Strong transcription Fetal Intestine Large intestine
43 chr2:173349400-173365200 Strong transcription H1 Cell Line embryonic stem cell
44 chr2:173349400-173370400 Strong transcription Rectal Mucosa Donor 31 rectum
45 chr2:173349600-173356000 Strong transcription Primary T regulatory cells fromperipheralblood blood
46 chr2:173349800-173356000 Weak transcription Primary B cells from peripheral blood blood
47 chr2:173349800-173360000 Strong transcription Primary hematopoietic stem cells short term culture blood
48 chr2:173350000-173360800 Weak transcription GM12878-XiMat blood
49 chr2:173350800-173359200 Strong transcription Thymus Thymus
50 chr2:173351000-173360800 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015