Variant report

Variant	rs16861061
Chromosome Location	chr2:173811696-173811697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13422397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1446979	1.00[EUR][1000 genomes]
rs16861147	1.00[EUR][1000 genomes]
rs16861224	1.00[EUR][1000 genomes]
rs2676516	1.00[EUR][1000 genomes]
rs5010643	1.00[EUR][1000 genomes]
rs6714475	1.00[EUR][1000 genomes]
rs73019614	1.00[EUR][1000 genomes]
rs874779	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173800400-173812200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:173800600-173829400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:173807800-173816200	Weak transcription	Lung	lung
4	chr2:173807800-173831600	Weak transcription	Left Ventricle	heart
5	chr2:173809200-173811800	Enhancers	Liver	Liver
6	chr2:173809200-173812200	Weak transcription	NHEK	skin
7	chr2:173809600-173812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:173809600-173812000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:173809600-173816400	Weak transcription	Thymus	Thymus
10	chr2:173810800-173812200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:173811000-173813000	Enhancers	Hela-S3	cervix
12	chr2:173811400-173813600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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