Variant report

Variant	rs2676516
Chromosome Location	chr2:173846409-173846410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173844919..173847771-chr2:173851591..173855437,4	MCF-7	breast:
2	chr2:173844924..173850688-chr2:173851282..173855756,6	K562	blood:
3	chr2:173837484..173839345-chr2:173845111..173847088,2	MCF-7	breast:
4	chr2:173846019..173848383-chr2:173886848..173888361,2	MCF-7	breast:
5	chr2:173840982..173843855-chr2:173843865..173846524,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1446979	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1446980	1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs16861061	1.00[EUR][1000 genomes]
rs16861147	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16861224	1.00[EUR][1000 genomes]
rs16861293	1.00[EUR][1000 genomes]
rs1823153	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1863174	1.00[MEX][hapmap]
rs2042565	0.83[AMR][1000 genomes]
rs2123506	0.90[AMR][1000 genomes]
rs2553004	1.00[MEX][hapmap]
rs2553014	1.00[MEX][hapmap]
rs2592938	1.00[MEX][hapmap]
rs2592940	1.00[MEX][hapmap];0.80[AMR][1000 genomes]
rs2592945	0.90[AMR][1000 genomes]
rs2676503	1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs2676527	1.00[MEX][hapmap]
rs2884283	1.00[MEX][hapmap]
rs4972866	1.00[MEX][hapmap]
rs5010643	1.00[EUR][1000 genomes]
rs6714475	1.00[EUR][1000 genomes]
rs73019614	1.00[EUR][1000 genomes]
rs7585729	1.00[MEX][hapmap]
rs874779	1.00[EUR][1000 genomes]
rs930624	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173832200-173850000	Weak transcription	Brain Anterior Caudate	brain
2	chr2:173832600-173850200	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:173833800-173855600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:173833800-173859000	Weak transcription	Fetal Intestine Small	intestine
5	chr2:173833800-173860800	Weak transcription	Right Ventricle	heart
6	chr2:173834200-173855800	Weak transcription	Brain Angular Gyrus	brain
7	chr2:173835800-173886800	Weak transcription	Lung	lung
8	chr2:173842400-173850800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:173842600-173850000	Weak transcription	Fetal Heart	heart
10	chr2:173842800-173855800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:173843200-173848600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:173843200-173849000	Weak transcription	Fetal Stomach	stomach
13	chr2:173843200-173850000	Weak transcription	Left Ventricle	heart
14	chr2:173843200-173850000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr2:173843200-173861400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:173843400-173847800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr2:173843400-173849400	Weak transcription	Fetal Thymus	thymus
18	chr2:173843400-173858200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:173843600-173850400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr2:173843800-173848000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr2:173844200-173850000	Weak transcription	Liver	Liver
22	chr2:173844400-173849400	Weak transcription	A549	lung
23	chr2:173845400-173853200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links