Variant report

Variant	rs2676503
Chromosome Location	chr2:173822503-173822504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12989240	1.00[MEX][hapmap]
rs13392443	1.00[EUR][1000 genomes]
rs13411673	1.00[EUR][1000 genomes]
rs1446979	0.90[AMR][1000 genomes]
rs1446980	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1823153	0.90[AMR][1000 genomes]
rs1863174	1.00[MEX][hapmap]
rs2123506	1.00[AMR][1000 genomes]
rs2357807	1.00[MEX][hapmap]
rs2553004	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs2553014	1.00[MEX][hapmap]
rs2592938	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs2592940	1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs2592945	1.00[AMR][1000 genomes]
rs2676516	1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs2676527	1.00[MEX][hapmap]
rs2884283	1.00[MEX][hapmap]
rs4972866	1.00[MEX][hapmap]
rs57057680	1.00[EUR][1000 genomes]
rs7585729	1.00[MEX][hapmap]
rs930624	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2676503	TANC1	trans	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173800600-173829400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:173807800-173831600	Weak transcription	Left Ventricle	heart
3	chr2:173816600-173831800	Weak transcription	Lung	lung
4	chr2:173819200-173827000	Weak transcription	NHLF	lung
5	chr2:173819600-173826800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:173819800-173826800	Weak transcription	NHEK	skin
7	chr2:173820800-173830400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:173821600-173822600	Enhancers	Fetal Thymus	thymus
9	chr2:173821600-173822800	Enhancers	Thymus	Thymus
10	chr2:173822400-173835000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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