Variant report

Variant	rs1823153
Chromosome Location	chr2:173844620-173844621
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173843570..173846264-chr2:173848110..173849816,3	K562	blood:
2	chr2:173842376..173845001-chr2:173860642..173863497,2	MCF-7	breast:
3	chr2:173843217..173845112-chr2:173857829..173859868,2	K562	blood:
4	chr2:173840982..173843855-chr2:173843865..173846524,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1446979	1.00[AMR][1000 genomes]
rs1446980	0.90[AMR][1000 genomes]
rs2042565	0.83[AMR][1000 genomes]
rs2123506	0.90[AMR][1000 genomes]
rs2592940	0.80[AMR][1000 genomes]
rs2592945	0.90[AMR][1000 genomes]
rs2676503	0.90[AMR][1000 genomes]
rs2676516	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs930624	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173832200-173850000	Weak transcription	Brain Anterior Caudate	brain
2	chr2:173832600-173850200	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:173833800-173845000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:173833800-173855600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:173833800-173859000	Weak transcription	Fetal Intestine Small	intestine
6	chr2:173833800-173860800	Weak transcription	Right Ventricle	heart
7	chr2:173834200-173855800	Weak transcription	Brain Angular Gyrus	brain
8	chr2:173835800-173886800	Weak transcription	Lung	lung
9	chr2:173842400-173850800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:173842600-173850000	Weak transcription	Fetal Heart	heart
11	chr2:173842800-173855800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:173843200-173848600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:173843200-173849000	Weak transcription	Fetal Stomach	stomach
14	chr2:173843200-173850000	Weak transcription	Left Ventricle	heart
15	chr2:173843200-173850000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr2:173843200-173861400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:173843400-173847800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:173843400-173849400	Weak transcription	Fetal Thymus	thymus
19	chr2:173843400-173858200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:173843600-173850400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr2:173843800-173848000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr2:173844200-173850000	Weak transcription	Liver	Liver
23	chr2:173844400-173849400	Weak transcription	A549	lung

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