Variant report

Variant	rs2592940
Chromosome Location	chr2:173817824-173817825
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12989240	1.00[MEX][hapmap]
rs1446979	0.80[AMR][1000 genomes]
rs1446980	1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs1823153	0.80[AMR][1000 genomes]
rs1863174	1.00[MEX][hapmap]
rs2042565	0.83[AMR][1000 genomes]
rs2123506	0.90[AMR][1000 genomes]
rs2357807	1.00[MEX][hapmap]
rs2553004	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2553014	1.00[MEX][hapmap]
rs2592938	1.00[MEX][hapmap]
rs2592945	0.90[AMR][1000 genomes]
rs2676503	1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs2676516	1.00[MEX][hapmap];0.80[AMR][1000 genomes]
rs2676527	1.00[MEX][hapmap]
rs2884283	1.00[MEX][hapmap]
rs4972866	1.00[MEX][hapmap]
rs7585729	1.00[MEX][hapmap]
rs930624	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3365781	chr2:173817156-173819254	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2762295	chr2:173817340-173818314	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173800600-173829400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:173807800-173831600	Weak transcription	Left Ventricle	heart
3	chr2:173813000-173818200	Weak transcription	Osteobl	bone
4	chr2:173813000-173818400	Weak transcription	NHLF	lung
5	chr2:173816600-173820200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:173816600-173831800	Weak transcription	Lung	lung
7	chr2:173816800-173818800	Weak transcription	Hela-S3	cervix
8	chr2:173816800-173821600	Weak transcription	Fetal Thymus	thymus
9	chr2:173817000-173820200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:173817200-173821600	Weak transcription	Thymus	Thymus
11	chr2:173817400-173819000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr2:173817600-173818800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:173817800-173818200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:173817800-173818200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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