Variant report

Variant	rs2123506
Chromosome Location	chr2:173839100-173839101
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173837484..173839345-chr2:173845111..173847088,2	MCF-7	breast:
2	chr2:173838607..173842976-chr2:173848438..173851310,4	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1446979	0.90[AMR][1000 genomes]
rs1446980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1823153	0.90[AMR][1000 genomes]
rs2553004	0.81[AMR][1000 genomes]
rs2592938	0.81[AMR][1000 genomes]
rs2592940	0.90[AMR][1000 genomes]
rs2592945	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2676503	1.00[AMR][1000 genomes]
rs2676516	0.90[AMR][1000 genomes]
rs930624	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173829000-173842800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:173830400-173840400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:173832200-173850000	Weak transcription	Brain Anterior Caudate	brain
4	chr2:173832600-173850200	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:173833800-173842200	Weak transcription	Fetal Heart	heart
6	chr2:173833800-173845000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:173833800-173855600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:173833800-173859000	Weak transcription	Fetal Intestine Small	intestine
9	chr2:173833800-173860800	Weak transcription	Right Ventricle	heart
10	chr2:173834000-173841800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:173834200-173841400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:173834200-173842200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:173834200-173855800	Weak transcription	Brain Angular Gyrus	brain
14	chr2:173835200-173840800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr2:173835800-173842800	Weak transcription	Left Ventricle	heart
16	chr2:173835800-173886800	Weak transcription	Lung	lung
17	chr2:173836000-173840800	Weak transcription	Fetal Lung	lung
18	chr2:173836200-173841800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:173836200-173842200	Weak transcription	Fetal Stomach	stomach
20	chr2:173836800-173840800	Weak transcription	Primary T cells from cord blood	blood
21	chr2:173837400-173842400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr2:173837600-173841800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr2:173837600-173843600	Weak transcription	Liver	Liver
24	chr2:173838200-173840800	Weak transcription	Fetal Thymus	thymus
25	chr2:173838400-173840000	Weak transcription	Thymus	Thymus

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