Variant report

Variant	rs2553004
Chromosome Location	chr2:173802087-173802088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12989240	1.00[MEX][hapmap]
rs1446980	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs1863174	1.00[MEX][hapmap]
rs2042565	0.91[AMR][1000 genomes]
rs2123506	0.81[AMR][1000 genomes]
rs2357807	1.00[MEX][hapmap]
rs2553014	1.00[MEX][hapmap]
rs2592938	1.00[MEX][hapmap]
rs2592940	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2592945	0.81[AMR][1000 genomes]
rs2676503	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs2676516	1.00[MEX][hapmap]
rs2676527	1.00[MEX][hapmap]
rs2884283	1.00[MEX][hapmap]
rs4972866	1.00[MEX][hapmap]
rs7585729	1.00[MEX][hapmap]
rs930624	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173796400-173802600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr2:173796600-173802800	Weak transcription	Pancreas	Pancrea
3	chr2:173796600-173809000	Weak transcription	Fetal Heart	heart
4	chr2:173798400-173805200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:173800400-173812200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr2:173800600-173829400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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