Variant report

Variant	rs2553014
Chromosome Location	chr2:173764392-173764393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12989240	1.00[MEX][hapmap]
rs1344590	0.84[AMR][1000 genomes]
rs1446980	1.00[MEX][hapmap]
rs1469214	0.84[AMR][1000 genomes]
rs1863174	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs1968290	0.85[AMR][1000 genomes]
rs2357807	1.00[MEX][hapmap]
rs2553004	1.00[MEX][hapmap]
rs2553010	0.85[AMR][1000 genomes]
rs2553012	0.85[AMR][1000 genomes]
rs2553016	0.84[AMR][1000 genomes]
rs2553017	0.84[AMR][1000 genomes]
rs2592938	1.00[MEX][hapmap]
rs2592940	1.00[MEX][hapmap]
rs2676503	1.00[MEX][hapmap]
rs2676514	0.84[AMR][1000 genomes]
rs2676516	1.00[MEX][hapmap]
rs2676519	0.84[AMR][1000 genomes]
rs2676527	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs2884283	1.00[MEX][hapmap]
rs4541226	0.84[AMR][1000 genomes]
rs4972866	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs6754271	0.84[AMR][1000 genomes]
rs7585729	1.00[MEX][hapmap]
rs7607344	0.84[AMR][1000 genomes]
rs933785	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173759000-173764400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:173759000-173770600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:173762200-173765800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:173763000-173765000	Enhancers	Lung	lung
5	chr2:173763200-173764800	Enhancers	Left Ventricle	heart
6	chr2:173764000-173764600	Enhancers	Adipose Nuclei	Adipose
7	chr2:173764000-173764800	Enhancers	Right Atrium	heart
8	chr2:173764200-173764400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:173764200-173764400	Enhancers	Psoas Muscle	Psoas
10	chr2:173764200-173764600	Enhancers	Right Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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