Variant report

Variant	rs16861147
Chromosome Location	chr2:173873090-173873091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173870759..173874382-chr2:173875343..173878397,4	MCF-7	breast:
2	chr2:173872721..173875607-chr2:173903773..173905565,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11898166	1.00[MEX][hapmap]
rs1446979	1.00[EUR][1000 genomes]
rs16861028	1.00[MEX][hapmap]
rs16861061	1.00[EUR][1000 genomes]
rs16861224	1.00[EUR][1000 genomes]
rs16861249	1.00[MEX][hapmap]
rs16861293	1.00[EUR][1000 genomes]
rs2676516	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs5010643	1.00[EUR][1000 genomes]
rs6714475	1.00[EUR][1000 genomes]
rs73016813	1.00[EUR][1000 genomes]
rs73019614	1.00[EUR][1000 genomes]
rs7566445	1.00[MEX][hapmap]
rs874779	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173835800-173886800	Weak transcription	Lung	lung
2	chr2:173856000-173885200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:173856200-173882400	Weak transcription	Left Ventricle	heart
4	chr2:173856200-173892600	Weak transcription	Brain Angular Gyrus	brain
5	chr2:173860800-173877800	Weak transcription	Adipose Nuclei	Adipose
6	chr2:173861000-173888000	Weak transcription	Fetal Stomach	stomach
7	chr2:173862200-173881800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:173862200-173883600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:173862800-173874000	Weak transcription	Small Intestine	intestine
10	chr2:173867800-173880800	Weak transcription	Liver	Liver
11	chr2:173868000-173902000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:173868200-173875400	Weak transcription	Pancreas	Pancrea
13	chr2:173868200-173878600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr2:173868600-173892200	Weak transcription	Fetal Intestine Large	intestine
15	chr2:173871000-173873600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:173871000-173881200	Weak transcription	Ovary	ovary
17	chr2:173871000-173884400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr2:173871000-173886000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:173871200-173881000	Weak transcription	Fetal Heart	heart
20	chr2:173873000-173874600	Enhancers	HepG2	liver

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