Variant report

Variant	rs874779
Chromosome Location	chr2:173945153-173945154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173944994..173946697-chr2:174012717..174014873,2	MCF-7	breast:
2	chr2:173915241..173916984-chr2:173944173..173946590,2	MCF-7	breast:
3	chr2:173938088..173944133-chr2:173944779..173953152,16	MCF-7	breast:
4	chr2:173945072..173946599-chr2:174032993..174034733,2	K562	blood:
5	chr2:173944303..173947485-chr2:173950137..173953589,4	MCF-7	breast:
6	chr2:173907898..173920360-chr2:173936226..173946823,30	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091428	Chromatin interaction
ENSG00000091436	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1446979	1.00[EUR][1000 genomes]
rs16861061	1.00[EUR][1000 genomes]
rs16861147	1.00[EUR][1000 genomes]
rs16861224	1.00[EUR][1000 genomes]
rs16861293	1.00[EUR][1000 genomes]
rs2676516	1.00[EUR][1000 genomes]
rs5010643	1.00[EUR][1000 genomes]
rs60607753	1.00[EUR][1000 genomes]
rs6714475	1.00[EUR][1000 genomes]
rs73016813	1.00[EUR][1000 genomes]
rs73018862	1.00[EUR][1000 genomes]
rs73019614	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173941600-173947200	Weak transcription	Gastric	stomach
2	chr2:173941600-173955200	Weak transcription	Lung	lung
3	chr2:173941600-173955200	Weak transcription	Pancreas	Pancrea
4	chr2:173941600-173969600	Weak transcription	Spleen	Spleen
5	chr2:173941800-173955200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:173941800-173955200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:173942000-173946600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:173942000-173951400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:173942000-173953000	Weak transcription	Stomach Mucosa	stomach
10	chr2:173942000-173955200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr2:173942000-173955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:173942000-173956000	Weak transcription	Fetal Thymus	thymus
13	chr2:173942200-173946200	Weak transcription	Primary T cells from cord blood	blood
14	chr2:173942600-173956400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:173942800-173946200	Weak transcription	Fetal Muscle Leg	muscle
16	chr2:173942800-173954800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr2:173942800-173955800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr2:173942800-173964600	Weak transcription	HUVEC	blood vessel
19	chr2:173942800-173971400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr2:173943000-173971200	Weak transcription	HSMMtube	muscle
21	chr2:173943200-173945200	Enhancers	Right Atrium	heart
22	chr2:173943200-173945600	Enhancers	Hela-S3	cervix
23	chr2:173943200-173955000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:173943400-173945600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:173943400-173945600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:173943400-173945600	Enhancers	NH-A	brain
27	chr2:173943400-173946200	Weak transcription	HepG2	liver
28	chr2:173943400-173951200	Weak transcription	Aorta	Aorta
29	chr2:173943400-173955200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr2:173943400-173955200	Weak transcription	Dnd41	blood
31	chr2:173943400-173974200	Weak transcription	Fetal Intestine Large	intestine
32	chr2:173943600-173945200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:173943600-173945400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:173943600-173947200	Weak transcription	Right Ventricle	heart
35	chr2:173943800-173946200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr2:173943800-173946400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr2:173943800-173956000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr2:173944000-173945200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr2:173944000-173945600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr2:173944000-173945600	Enhancers	Rectal Smooth Muscle	rectum
41	chr2:173944000-173945600	Enhancers	NHEK	skin
42	chr2:173944000-173945600	Enhancers	NHLF	lung
43	chr2:173944000-173945800	Enhancers	HMEC	breast
44	chr2:173944000-173946200	Weak transcription	Fetal Heart	heart
45	chr2:173944000-173946200	Enhancers	NHDF-Ad	bronchial
46	chr2:173944000-173946400	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr2:173944000-173947000	Weak transcription	K562	blood
48	chr2:173944000-173947400	Weak transcription	Liver	Liver
49	chr2:173944000-173948600	Weak transcription	Adipose Nuclei	Adipose
50	chr2:173944000-173948600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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