Variant report

Variant	rs16868345
Chromosome Location	chr8:102766304-102766305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102759103..102761260-chr8:102764517..102767172,2	MCF-7	breast:
2	chr8:102756631..102759925-chr8:102765539..102768574,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10505014	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1107231	1.00[YRI][hapmap]
rs16868333	1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16868366	1.00[AMR][1000 genomes]
rs16868369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868410	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868447	1.00[AMR][1000 genomes]
rs16868450	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868452	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868455	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868462	1.00[AMR][1000 genomes]
rs16868464	1.00[AMR][1000 genomes]
rs16868468	1.00[AMR][1000 genomes]
rs16868476	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16868478	1.00[AMR][1000 genomes]
rs16868486	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868765	1.00[YRI][hapmap]
rs6987345	1.00[AMR][1000 genomes]
rs6999759	1.00[AMR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
6	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
7	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
8	chr8:102759800-102767800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:102761400-102781000	Weak transcription	Liver	Liver
10	chr8:102763200-102766800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr8:102763200-102768400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:102763200-102768400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:102763600-102767600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:102764200-102768400	Weak transcription	Lung	lung
15	chr8:102764400-102768200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:102765000-102768000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:102765000-102770400	Weak transcription	Ovary	ovary
18	chr8:102765400-102767200	Strong transcription	Fetal Muscle Leg	muscle
19	chr8:102765400-102770000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:102765600-102769200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:102765800-102768800	Strong transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links