Variant report

Variant	rs16868450
Chromosome Location	chr8:102801370-102801371
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr8:102801244-102801496	SH-SY5Y	brain:	n/a	chr8:102801442-102801452 chr8:102801443-102801452 chr8:102801443-102801450 chr8:102801444-102801461 chr8:102801443-102801450 chr8:102801443-102801450 chr8:102801440-102801450
2	MXI1	chr8:102800876-102803913	SK-N-SH	brain:	n/a	chr8:102803282-102803297 chr8:102803284-102803299

Variant related genes	Relation type
NCALD	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10505014	1.00[AMR][1000 genomes]
rs16868333	1.00[AMR][1000 genomes]
rs16868345	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868366	1.00[AMR][1000 genomes]
rs16868369	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868410	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868447	1.00[AMR][1000 genomes]
rs16868452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868455	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868457	0.82[AFR][1000 genomes]
rs16868462	1.00[AMR][1000 genomes]
rs16868464	1.00[AMR][1000 genomes]
rs16868468	1.00[AMR][1000 genomes]
rs16868476	1.00[AMR][1000 genomes]
rs16868478	1.00[AMR][1000 genomes]
rs16868486	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6987345	1.00[AMR][1000 genomes]
rs6999759	1.00[AMR][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102784200-102802200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:102787400-102802400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:102787800-102802600	Weak transcription	Right Ventricle	heart
5	chr8:102790600-102802400	Weak transcription	Left Ventricle	heart
6	chr8:102790600-102802600	Weak transcription	Psoas Muscle	Psoas
7	chr8:102795200-102803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:102796400-102803000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:102796800-102802400	Weak transcription	NHDF-Ad	bronchial
10	chr8:102798600-102802000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:102798600-102802000	Weak transcription	Fetal Stomach	stomach
12	chr8:102798600-102802400	Weak transcription	Colon Smooth Muscle	Colon
13	chr8:102798600-102803000	Weak transcription	Pancreas	Pancrea
14	chr8:102798800-102802000	Weak transcription	Fetal Kidney	kidney
15	chr8:102798800-102802400	Weak transcription	Fetal Brain Male	brain
16	chr8:102798800-102802600	Weak transcription	Aorta	Aorta
17	chr8:102799400-102801400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr8:102799600-102803600	Active TSS	Fetal Muscle Trunk	muscle
19	chr8:102799800-102801800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:102800200-102801600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:102800200-102802400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:102800200-102802400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:102800200-102802400	Weak transcription	Fetal Lung	lung
24	chr8:102800200-102803000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:102800200-102803000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr8:102800200-102803000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr8:102800200-102803600	Active TSS	Ovary	ovary
28	chr8:102800400-102801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr8:102800400-102802400	Weak transcription	Brain Substantia Nigra	brain
30	chr8:102800400-102802600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:102800400-102802800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr8:102800400-102803200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr8:102800800-102801400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr8:102800800-102801800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:102800800-102802000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:102800800-102803800	Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr8:102801000-102801400	Enhancers	Rectal Smooth Muscle	rectum
38	chr8:102801000-102801800	Enhancers	Liver	Liver
39	chr8:102801000-102803000	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr8:102801000-102803200	Active TSS	Fetal Muscle Leg	muscle
41	chr8:102801200-102801600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr8:102801200-102802000	Weak transcription	GM12878-XiMat	blood
43	chr8:102801200-102802200	Weak transcription	Adipose Nuclei	Adipose
44	chr8:102801200-102802200	Weak transcription	Brain Anterior Caudate	brain
45	chr8:102801200-102802400	Weak transcription	Brain Hippocampus Middle	brain
46	chr8:102801200-102802600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr8:102801200-102803600	Active TSS	Right Atrium	heart

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