Variant report

Variant	rs16868462
Chromosome Location	chr8:102822433-102822434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10505014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868333	1.00[AMR][1000 genomes]
rs16868345	1.00[AMR][1000 genomes]
rs16868366	1.00[AMR][1000 genomes]
rs16868369	1.00[AMR][1000 genomes]
rs16868410	1.00[AMR][1000 genomes]
rs16868447	1.00[AMR][1000 genomes]
rs16868450	1.00[AMR][1000 genomes]
rs16868452	1.00[AMR][1000 genomes]
rs16868455	1.00[AMR][1000 genomes]
rs16868464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868486	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6987345	1.00[AMR][1000 genomes]
rs6999759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102817800-102829400	Weak transcription	Ovary	ovary
3	chr8:102821400-102822800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:102821800-102822800	Enhancers	Fetal Brain Male	brain
5	chr8:102821800-102822800	Enhancers	NHDF-Ad	bronchial
6	chr8:102822200-102822600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:102822200-102822600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr8:102822200-102822600	Enhancers	Rectal Smooth Muscle	rectum
9	chr8:102822200-102822600	Enhancers	HSMMtube	muscle
10	chr8:102822200-102822600	Enhancers	NHEK	skin
11	chr8:102822200-102822800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:102822400-102822600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:102822400-102822600	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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