Variant report

Variant	rs16868476
Chromosome Location	chr8:102824385-102824386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10505014	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1107231	1.00[YRI][hapmap]
rs16868333	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16868345	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16868366	1.00[AMR][1000 genomes]
rs16868369	1.00[AMR][1000 genomes]
rs16868410	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16868447	1.00[AMR][1000 genomes]
rs16868450	1.00[AMR][1000 genomes]
rs16868452	1.00[AMR][1000 genomes]
rs16868455	1.00[AMR][1000 genomes]
rs16868462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868486	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868765	1.00[YRI][hapmap]
rs6987345	1.00[AMR][1000 genomes]
rs6999759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102817800-102829400	Weak transcription	Ovary	ovary
3	chr8:102822800-102824600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:102823800-102825000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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