Variant report

Variant	rs16871366
Chromosome Location	chr6:11463219-11463220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11962387	1.00[ASN][1000 genomes]
rs11962527	1.00[ASN][1000 genomes]
rs11963496	1.00[ASN][1000 genomes]
rs11965815	1.00[ASN][1000 genomes]
rs17397079	1.00[ASN][1000 genomes]
rs17397134	1.00[ASN][1000 genomes]
rs17397448	1.00[ASN][1000 genomes]
rs17397532	1.00[ASN][1000 genomes]
rs17476088	1.00[ASN][1000 genomes]
rs17476123	1.00[ASN][1000 genomes]
rs17607332	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17607642	1.00[ASN][1000 genomes]
rs17607970	0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs17608111	1.00[ASN][1000 genomes]
rs17676117	0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs547448	1.00[ASN][1000 genomes]
rs55635543	1.00[ASN][1000 genomes]
rs55657760	1.00[ASN][1000 genomes]
rs55691332	1.00[ASN][1000 genomes]
rs55869413	1.00[ASN][1000 genomes]
rs55902701	1.00[ASN][1000 genomes]
rs56104474	1.00[ASN][1000 genomes]
rs56156527	1.00[ASN][1000 genomes]
rs58527489	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938970	1.00[ASN][1000 genomes]
rs72832975	1.00[ASN][1000 genomes]
rs72833000	1.00[ASN][1000 genomes]
rs72834704	1.00[ASN][1000 genomes]
rs72834710	1.00[ASN][1000 genomes]
rs72834714	1.00[ASN][1000 genomes]
rs72834785	1.00[ASN][1000 genomes]
rs72834795	1.00[ASN][1000 genomes]
rs72834796	1.00[ASN][1000 genomes]
rs72834797	1.00[ASN][1000 genomes]
rs72834801	1.00[ASN][1000 genomes]
rs72834802	1.00[ASN][1000 genomes]
rs72836604	1.00[ASN][1000 genomes]
rs72836607	1.00[ASN][1000 genomes]
rs72836621	1.00[ASN][1000 genomes]
rs73721733	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461774	1.00[ASN][1000 genomes]
rs9469166	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11459200-11465600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:11459800-11463800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:11460600-11466800	Weak transcription	Stomach Mucosa	stomach
4	chr6:11461000-11463600	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:11461600-11464600	Enhancers	HepG2	liver
6	chr6:11462000-11463400	Enhancers	GM12878-XiMat	blood
7	chr6:11462200-11464200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr6:11462600-11463400	Enhancers	Placenta	Placenta
9	chr6:11462800-11464000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:11462800-11464200	Enhancers	Adipose Nuclei	Adipose
11	chr6:11463000-11464000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:11463200-11466600	Weak transcription	Primary B cells from cord blood	blood

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