Variant report

Variant	rs72836607
Chromosome Location	chr6:11564336-11564337
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11141294..11142898-chr6:11563806..11566787,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11962387	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962527	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963496	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965815	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871366	1.00[ASN][1000 genomes]
rs17397079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397134	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397448	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397532	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476088	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476123	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17607332	1.00[ASN][1000 genomes]
rs17607642	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17607970	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17608090	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17608111	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676117	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270500	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4336440	0.89[EUR][1000 genomes]
rs547448	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55635543	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55657760	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691332	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55869413	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55902701	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56104474	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56156527	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56382227	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56383603	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58527489	1.00[ASN][1000 genomes]
rs6905551	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6921425	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6936344	0.89[EUR][1000 genomes]
rs6938970	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832975	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72833000	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834704	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834705	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72834710	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834714	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834783	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72834784	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72834785	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834795	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834796	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834797	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834801	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834802	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836604	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836611	0.90[AMR][1000 genomes]
rs72836621	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721733	1.00[ASN][1000 genomes]
rs7756513	0.90[AMR][1000 genomes]
rs9461774	1.00[ASN][1000 genomes]
rs9469166	1.00[ASN][1000 genomes]
rs9469216	0.82[EUR][1000 genomes]
rs9469218	0.84[EUR][1000 genomes]
rs9469223	0.85[EUR][1000 genomes]
rs9469359	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9986655	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1015234	chr6:11545582-11583516	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11540600-11566600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:11548000-11566600	Weak transcription	Placenta	Placenta
3	chr6:11548200-11565800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:11551600-11566600	Weak transcription	Aorta	Aorta
5	chr6:11552800-11566800	Weak transcription	Brain Anterior Caudate	brain
6	chr6:11553200-11565000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:11553400-11565800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:11553400-11566600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:11553400-11566800	Weak transcription	Gastric	stomach
10	chr6:11553400-11567000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:11556400-11568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:11556800-11566800	Weak transcription	Lung	lung
13	chr6:11556800-11571600	Weak transcription	Ovary	ovary
14	chr6:11557000-11565000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:11557000-11575600	Weak transcription	Spleen	Spleen
16	chr6:11557200-11566200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:11557200-11575400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:11557400-11565800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:11557400-11573200	Weak transcription	Psoas Muscle	Psoas
20	chr6:11558400-11566800	Weak transcription	Fetal Stomach	stomach
21	chr6:11559000-11566400	Weak transcription	Fetal Brain Female	brain
22	chr6:11559200-11566000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:11559400-11565800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:11559800-11566600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:11561400-11566000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:11561800-11565800	Weak transcription	Adipose Nuclei	Adipose
27	chr6:11562200-11566400	Weak transcription	Brain Germinal Matrix	brain
28	chr6:11562400-11565800	Weak transcription	Primary T cells from cord blood	blood
29	chr6:11563400-11575600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:11563600-11565200	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr6:11563800-11564400	Enhancers	Left Ventricle	heart
32	chr6:11563800-11565000	Weak transcription	Pancreas	Pancrea
33	chr6:11563800-11565200	Enhancers	HUVEC	blood vessel
34	chr6:11564000-11564600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr6:11564000-11566200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:11564200-11565000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:11564200-11566000	Weak transcription	Dnd41	blood
38	chr6:11564200-11566800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:11564200-11569200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:11564200-11573400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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