Variant report

Variant	rs4336440
Chromosome Location	chr6:11492749-11492750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11962387	0.92[EUR][1000 genomes]
rs11962527	0.92[EUR][1000 genomes]
rs11963496	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs11965815	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs17397079	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs17397134	0.92[EUR][1000 genomes]
rs17397448	0.88[EUR][1000 genomes]
rs17397532	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs17476088	0.89[EUR][1000 genomes]
rs17476123	0.89[EUR][1000 genomes]
rs17607642	0.92[EUR][1000 genomes]
rs17607970	0.90[CEU][hapmap];0.96[EUR][1000 genomes]
rs17608090	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17608111	0.96[EUR][1000 genomes]
rs17676117	0.90[CEU][hapmap];0.96[EUR][1000 genomes]
rs41270500	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547448	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs55635543	0.93[EUR][1000 genomes]
rs55657760	0.92[EUR][1000 genomes]
rs55691332	0.93[EUR][1000 genomes]
rs55869413	0.84[EUR][1000 genomes]
rs55902701	0.89[EUR][1000 genomes]
rs56104474	0.89[EUR][1000 genomes]
rs56156527	0.92[EUR][1000 genomes]
rs56382227	0.89[EUR][1000 genomes]
rs56383603	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899374	0.97[AFR][1000 genomes]
rs6905551	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921425	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936344	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938970	0.84[EUR][1000 genomes]
rs72832975	0.84[EUR][1000 genomes]
rs72833000	0.96[EUR][1000 genomes]
rs72834704	0.96[EUR][1000 genomes]
rs72834705	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834710	0.96[EUR][1000 genomes]
rs72834714	0.96[EUR][1000 genomes]
rs72834783	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834784	0.95[EUR][1000 genomes]
rs72834785	0.92[EUR][1000 genomes]
rs72834795	0.93[EUR][1000 genomes]
rs72834796	0.92[EUR][1000 genomes]
rs72834797	0.92[EUR][1000 genomes]
rs72834801	0.92[EUR][1000 genomes]
rs72834802	0.89[EUR][1000 genomes]
rs72836604	0.89[EUR][1000 genomes]
rs72836607	0.89[EUR][1000 genomes]
rs72836621	0.89[EUR][1000 genomes]
rs9461774	0.85[EUR][1000 genomes]
rs9461777	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469166	0.81[EUR][1000 genomes]
rs9469216	0.86[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469218	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469222	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469223	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469359	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986655	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3357042	chr6:11489266-11493964	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3372842	chr6:11489366-11493264	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3396914	chr6:11489566-11493564	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3441435	chr6:11489666-11493664	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3428735	chr6:11492248-11492799	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11483800-11495000	Weak transcription	Pancreas	Pancrea
2	chr6:11486800-11496000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:11486800-11496800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:11487000-11495000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:11487400-11495800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:11487400-11495800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:11491800-11495800	Weak transcription	Fetal Kidney	kidney
8	chr6:11491800-11497200	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:11492000-11492800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:11492000-11493200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:11492000-11493400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:11492000-11493400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:11492000-11493600	Enhancers	NHDF-Ad	bronchial
14	chr6:11492000-11496200	Enhancers	Primary B cells from cord blood	blood
15	chr6:11492000-11498200	Enhancers	A549	lung
16	chr6:11492200-11493000	Enhancers	HSMMtube	muscle
17	chr6:11492200-11493600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:11492200-11493600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:11492200-11493800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:11492200-11497400	Enhancers	HepG2	liver
21	chr6:11492400-11492800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:11492400-11493400	Enhancers	Osteobl	bone
23	chr6:11492400-11493800	Flanking Active TSS	GM12878-XiMat	blood
24	chr6:11492600-11492800	Weak transcription	Lung	lung
25	chr6:11492600-11493200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:11492600-11493200	Enhancers	Monocytes-CD14+_RO01746	blood

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