Variant report

Variant	rs56104474
Chromosome Location	chr6:11588699-11588700
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11962387	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962527	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963496	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871366	1.00[ASN][1000 genomes]
rs17397079	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397134	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397448	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17607332	1.00[ASN][1000 genomes]
rs17607642	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17607970	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17608090	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17608111	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676117	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270500	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4336440	0.89[EUR][1000 genomes]
rs547448	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55635543	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55657760	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691332	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55869413	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55902701	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56156527	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56382227	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56383603	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58527489	1.00[ASN][1000 genomes]
rs6905551	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6921425	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6936344	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6938970	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832951	1.00[AFR][1000 genomes]
rs72832975	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72833000	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834704	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834705	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72834710	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834714	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834780	1.00[AFR][1000 genomes]
rs72834783	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72834784	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72834785	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834795	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834796	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834797	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834801	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834802	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836607	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836611	0.84[AMR][1000 genomes]
rs72836621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721733	1.00[ASN][1000 genomes]
rs7756513	0.84[AMR][1000 genomes]
rs9461774	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9461777	0.86[AMR][1000 genomes]
rs9469166	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9469216	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9469218	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9469222	0.83[AMR][1000 genomes]
rs9469223	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9469359	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9986655	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11586200-11591200	Enhancers	NHLF	lung
2	chr6:11587000-11589800	Weak transcription	Fetal Lung	lung
3	chr6:11587000-11592400	Weak transcription	Liver	Liver
4	chr6:11587200-11589400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:11587200-11589600	Weak transcription	A549	lung
6	chr6:11587200-11590400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:11587200-11590400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:11587200-11592600	Weak transcription	Ovary	ovary
9	chr6:11587200-11593000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:11587400-11589400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:11587400-11589400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:11587400-11589400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:11587400-11589400	Weak transcription	HUVEC	blood vessel
14	chr6:11587400-11589400	Weak transcription	NHDF-Ad	bronchial
15	chr6:11587400-11589400	Weak transcription	Osteobl	bone
16	chr6:11587400-11589800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:11587400-11590000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:11587400-11591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:11587400-11592200	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:11587400-11592400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:11587400-11592600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:11587400-11592800	Weak transcription	Placenta	Placenta
23	chr6:11587400-11593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:11587600-11589400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:11587600-11589600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:11587600-11589800	Weak transcription	Fetal Stomach	stomach
27	chr6:11587600-11592800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:11587800-11589400	Weak transcription	NH-A	brain
29	chr6:11588400-11588800	Active TSS	HSMMtube	muscle
30	chr6:11588600-11590000	Genic enhancers	HSMM	muscle
31	chr6:11588600-11591000	Weak transcription	Aorta	Aorta

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