Variant report

Variant	rs11962527
Chromosome Location	chr6:11591246-11591247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11585369..11588205-chr6:11589273..11592735,3	MCF-7	breast:
2	chr6:11589569..11591448-chr6:12289511..12291212,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078401	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11962387	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963496	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965815	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871366	1.00[ASN][1000 genomes]
rs17397079	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397134	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397448	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397532	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476088	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476123	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17607332	1.00[ASN][1000 genomes]
rs17607642	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17607970	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17608090	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17608111	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676117	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270500	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4336440	0.92[EUR][1000 genomes]
rs547448	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55635543	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55657760	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691332	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55869413	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55902701	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56104474	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56156527	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56382227	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56383603	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58527489	1.00[ASN][1000 genomes]
rs6905551	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6921425	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6936344	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6938970	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832975	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833000	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834704	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834705	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72834710	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834714	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834783	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72834784	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72834785	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834795	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834796	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834797	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834801	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834802	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836604	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836607	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836611	0.81[AMR][1000 genomes]
rs72836621	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721733	1.00[ASN][1000 genomes]
rs7756513	0.81[AMR][1000 genomes]
rs9461774	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9461777	0.82[AMR][1000 genomes]
rs9469166	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9469216	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9469218	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9469223	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9469359	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9986655	0.96[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11587000-11592400	Weak transcription	Liver	Liver
2	chr6:11587200-11592600	Weak transcription	Ovary	ovary
3	chr6:11587200-11593000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:11587400-11592200	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:11587400-11592400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:11587400-11592600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:11587400-11592800	Weak transcription	Placenta	Placenta
8	chr6:11587400-11593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:11587600-11592800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:11589400-11591400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:11590600-11592200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:11590600-11592600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:11590800-11591600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:11590800-11592600	Weak transcription	A549	lung
15	chr6:11591000-11591400	Bivalent/Poised TSS	K562	blood
16	chr6:11591000-11592800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:11591200-11591400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:11591200-11591400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:11591200-11591600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:11591200-11592000	Weak transcription	HSMMtube	muscle
21	chr6:11591200-11592000	Weak transcription	NH-A	brain
22	chr6:11591200-11592400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:11591200-11592400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:11591200-11592600	Weak transcription	Fetal Lung	lung
25	chr6:11591200-11592600	Weak transcription	HSMM	muscle
26	chr6:11591200-11592800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:11591200-11592800	Weak transcription	NHDF-Ad	bronchial
28	chr6:11591200-11592800	Weak transcription	NHLF	lung
29	chr6:11591200-11592800	Weak transcription	Osteobl	bone
30	chr6:11591200-11593000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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