Variant report

Variant	rs16874040
Chromosome Location	chr6:45923789-45923790
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44628849..44631446-chr6:45923320..45924995,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16874042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16874046	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144161	1.00[CEU][hapmap]
rs3777545	0.88[JPT][hapmap]
rs3777573	0.80[YRI][hapmap]
rs3777584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3777586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56766806	0.87[ASN][1000 genomes]
rs7454113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9472668	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45912800-45928400	Weak transcription	Spleen	Spleen
2	chr6:45917200-45924800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:45918800-45938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:45919600-45923800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:45919600-45928000	Weak transcription	Adipose Nuclei	Adipose
6	chr6:45920000-45927200	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:45920000-45927200	Weak transcription	Placenta	Placenta
8	chr6:45920000-45928200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:45920000-45934800	Weak transcription	Colonic Mucosa	Colon
10	chr6:45920200-45926600	Weak transcription	Fetal Lung	lung
11	chr6:45920800-45924400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:45921200-45928200	Weak transcription	Lung	lung
13	chr6:45921400-45926800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:45922400-45924800	Genic enhancers	Right Ventricle	heart
15	chr6:45922400-45925800	Enhancers	Psoas Muscle	Psoas
16	chr6:45922800-45923800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:45923000-45925400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:45923200-45923800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr6:45923200-45924400	Enhancers	Fetal Intestine Small	intestine
20	chr6:45923200-45924600	Weak transcription	Left Ventricle	heart
21	chr6:45923200-45925600	Weak transcription	Right Atrium	heart
22	chr6:45923200-45927400	Weak transcription	Fetal Kidney	kidney
23	chr6:45923200-45929200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr6:45923200-45931200	Weak transcription	Fetal Intestine Large	intestine
25	chr6:45923400-45924600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:45923400-45924600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:45923400-45924800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:45923400-45925200	Weak transcription	Fetal Heart	heart
29	chr6:45923600-45924000	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr6:45923600-45924000	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr6:45923600-45924200	Enhancers	Small Intestine	intestine
32	chr6:45923600-45924400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:45923600-45924600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr6:45923600-45924800	Enhancers	HUES64 Cell Line	embryonic stem cell

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