Variant report

Variant	rs7454113
Chromosome Location	chr6:45922121-45922122
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45919715..45922197-chr6:45926352..45928552,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16874040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16874042	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16874046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2144161	1.00[CEU][hapmap]
rs3777545	0.88[JPT][hapmap]
rs3777584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56766806	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45911000-45923600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:45912600-45923000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:45912800-45928400	Weak transcription	Spleen	Spleen
4	chr6:45917200-45924800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:45918800-45938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:45919200-45923000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:45919200-45923200	Genic enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:45919400-45923200	Strong transcription	Fetal Intestine Large	intestine
9	chr6:45919600-45923800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:45919600-45928000	Weak transcription	Adipose Nuclei	Adipose
11	chr6:45920000-45922800	Weak transcription	Pancreas	Pancrea
12	chr6:45920000-45927200	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:45920000-45927200	Weak transcription	Placenta	Placenta
14	chr6:45920000-45928200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:45920000-45934800	Weak transcription	Colonic Mucosa	Colon
16	chr6:45920200-45926600	Weak transcription	Fetal Lung	lung
17	chr6:45920600-45922200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:45920800-45924400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:45921000-45922400	Weak transcription	Fetal Kidney	kidney
20	chr6:45921200-45922200	Weak transcription	Fetal Heart	heart
21	chr6:45921200-45928200	Weak transcription	Lung	lung
22	chr6:45921400-45922400	Weak transcription	Psoas Muscle	Psoas
23	chr6:45921400-45922600	Weak transcription	Right Atrium	heart
24	chr6:45921400-45923200	Weak transcription	Fetal Intestine Small	intestine
25	chr6:45921400-45926800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:45921600-45922200	Strong transcription	Left Ventricle	heart
27	chr6:45921600-45922400	Weak transcription	Right Ventricle	heart
28	chr6:45921800-45922200	Weak transcription	Duodenum Mucosa	Duodenum

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