Variant report

Variant	rs3777586
Chromosome Location	chr6:45919281-45919282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16874040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16874042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16874046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3777545	0.88[JPT][hapmap]
rs3777573	0.82[YRI][hapmap]
rs3777584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56766806	0.91[ASN][1000 genomes]
rs7454113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45911000-45923600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:45912600-45923000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:45912800-45928400	Weak transcription	Spleen	Spleen
4	chr6:45913800-45920000	Enhancers	Placenta	Placenta
5	chr6:45914600-45919400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:45915800-45919800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:45916200-45919400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:45917200-45924800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:45918200-45920000	Enhancers	Colonic Mucosa	Colon
10	chr6:45918800-45919400	Genic enhancers	Fetal Intestine Large	intestine
11	chr6:45918800-45920000	Enhancers	Stomach Smooth Muscle	stomach
12	chr6:45918800-45920200	Enhancers	Fetal Lung	lung
13	chr6:45918800-45938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:45919000-45919400	Genic enhancers	Fetal Intestine Small	intestine
15	chr6:45919000-45919600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:45919000-45919600	Enhancers	Adipose Nuclei	Adipose
17	chr6:45919000-45919600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr6:45919000-45919800	Enhancers	Brain Germinal Matrix	brain
19	chr6:45919000-45920000	Enhancers	Fetal Muscle Leg	muscle
20	chr6:45919000-45920000	Enhancers	Pancreas	Pancrea
21	chr6:45919000-45920200	Enhancers	Fetal Stomach	stomach
22	chr6:45919000-45920400	Enhancers	Gastric	stomach
23	chr6:45919000-45921200	Enhancers	Fetal Heart	heart
24	chr6:45919000-45921400	Enhancers	Psoas Muscle	Psoas
25	chr6:45919000-45921400	Enhancers	Right Atrium	heart
26	chr6:45919000-45921400	Enhancers	HSMMtube	muscle
27	chr6:45919000-45921600	Genic enhancers	Left Ventricle	heart
28	chr6:45919200-45919400	Enhancers	Fetal Muscle Trunk	muscle
29	chr6:45919200-45919400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
30	chr6:45919200-45919600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:45919200-45919600	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr6:45919200-45920000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:45919200-45920000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:45919200-45920000	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr6:45919200-45920000	Flanking Active TSS	Fetal Kidney	kidney
36	chr6:45919200-45920000	Enhancers	Small Intestine	intestine
37	chr6:45919200-45920800	Enhancers	Lung	lung
38	chr6:45919200-45921400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:45919200-45921600	Genic enhancers	Right Ventricle	heart
40	chr6:45919200-45923000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
41	chr6:45919200-45923200	Genic enhancers	Rectal Mucosa Donor 31	rectum

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