Variant report

Variant	rs3777584
Chromosome Location	chr6:45917557-45917558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16874040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16874042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16874046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3777545	0.88[JPT][hapmap]
rs3777586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56766806	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7454113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45898800-45919200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:45907400-45917600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:45908000-45918600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:45908200-45918200	Weak transcription	Colonic Mucosa	Colon
5	chr6:45911000-45919200	Weak transcription	Small Intestine	intestine
6	chr6:45911000-45923600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:45911200-45918000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:45911400-45919000	Weak transcription	Adipose Nuclei	Adipose
9	chr6:45912600-45923000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:45912800-45928400	Weak transcription	Spleen	Spleen
11	chr6:45913400-45919000	Strong transcription	Fetal Intestine Small	intestine
12	chr6:45913800-45920000	Enhancers	Placenta	Placenta
13	chr6:45914200-45919200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:45914600-45918800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:45914600-45919400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:45915000-45919200	Weak transcription	Lung	lung
17	chr6:45915200-45919000	Weak transcription	Right Atrium	heart
18	chr6:45915400-45919000	Weak transcription	Fetal Heart	heart
19	chr6:45915800-45918800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:45915800-45919800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:45916200-45919400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:45916800-45919000	Weak transcription	Right Ventricle	heart
23	chr6:45917200-45918000	Enhancers	Hela-S3	cervix
24	chr6:45917200-45918800	Weak transcription	Fetal Intestine Large	intestine
25	chr6:45917200-45919000	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:45917200-45919000	Weak transcription	Left Ventricle	heart
27	chr6:45917200-45919000	Weak transcription	Pancreas	Pancrea
28	chr6:45917200-45919000	Weak transcription	Psoas Muscle	Psoas
29	chr6:45917200-45919200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:45917200-45919200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr6:45917200-45924800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:45917400-45917800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr6:45917400-45917800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:45917400-45918800	Weak transcription	Fetal Kidney	kidney
35	chr6:45917400-45919000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:45917400-45919000	Weak transcription	HSMMtube	muscle
37	chr6:45917400-45919200	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links