Variant report
| Variant | rs16874255 |
|---|---|
| Chromosome Location | chr5:4920946-4920947 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MED10-23 | chr5:4919580-4921256 | l_2855_chr5:4828677-4919420_testes |
| 2 | lnc-ADAMTS16-7 | chr5:4920392-4921256 | l_2856_chr5:4919579-4921256_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10072728 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11949594 | 1.00[EUR][1000 genomes] |
| rs12108705 | 1.00[EUR][1000 genomes] |
| rs1551942 | 1.00[EUR][1000 genomes] |
| rs1651743 | 1.00[EUR][1000 genomes] |
| rs16874580 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16874600 | 1.00[EUR][1000 genomes] |
| rs16874607 | 1.00[EUR][1000 genomes] |
| rs479124 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55751833 | 1.00[EUR][1000 genomes] |
| rs595135 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs607839 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs670244 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73738308 | 1.00[EUR][1000 genomes] |
| rs891002 | 1.00[EUR][1000 genomes] |
| rs891003 | 1.00[EUR][1000 genomes] |
| rs9284963 | 1.00[EUR][1000 genomes] |
| rs9313094 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019579 | chr5:4557477-4997411 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
