Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10072728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11949594	1.00[EUR][1000 genomes]
rs12108705	1.00[EUR][1000 genomes]
rs1551942	1.00[EUR][1000 genomes]
rs1651743	1.00[EUR][1000 genomes]
rs16874255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874600	1.00[EUR][1000 genomes]
rs16874607	1.00[EUR][1000 genomes]
rs479124	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55751833	1.00[EUR][1000 genomes]
rs56147613	1.00[EUR][1000 genomes]
rs57249853	1.00[EUR][1000 genomes]
rs58125360	1.00[EUR][1000 genomes]
rs596041	0.98[AFR][1000 genomes]
rs607839	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61048069	1.00[EUR][1000 genomes]
rs623958	0.93[AFR][1000 genomes]
rs670244	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73738308	1.00[EUR][1000 genomes]
rs73738309	1.00[EUR][1000 genomes]
rs73738321	1.00[EUR][1000 genomes]
rs891002	1.00[EUR][1000 genomes]
rs891003	1.00[EUR][1000 genomes]
rs9284963	1.00[EUR][1000 genomes]
rs9313094	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019579	chr5:4557477-4997411	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1021653	chr5:4932992-5201887	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:4936400-4942000	Weak transcription	Adipose Nuclei	Adipose
2	chr5:4937800-4945600	Enhancers	Fetal Muscle Leg	muscle
3	chr5:4938000-4939000	Weak transcription	Fetal Muscle Trunk	muscle

Quick Search: