Variant report
| Variant | rs670244 |
|---|---|
| Chromosome Location | chr5:4935006-4935007 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10072728 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11949594 | 1.00[EUR][1000 genomes] |
| rs12108705 | 1.00[EUR][1000 genomes] |
| rs1551942 | 1.00[EUR][1000 genomes] |
| rs1651743 | 1.00[EUR][1000 genomes] |
| rs16874255 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16874580 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16874600 | 1.00[EUR][1000 genomes] |
| rs16874607 | 1.00[EUR][1000 genomes] |
| rs479124 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55751833 | 1.00[EUR][1000 genomes] |
| rs56147613 | 1.00[EUR][1000 genomes] |
| rs57249853 | 1.00[EUR][1000 genomes] |
| rs58125360 | 1.00[EUR][1000 genomes] |
| rs595135 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs596041 | 0.89[AFR][1000 genomes] |
| rs607839 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61048069 | 1.00[EUR][1000 genomes] |
| rs623958 | 0.95[AFR][1000 genomes] |
| rs73738308 | 1.00[EUR][1000 genomes] |
| rs73738309 | 1.00[EUR][1000 genomes] |
| rs73738321 | 1.00[EUR][1000 genomes] |
| rs891002 | 1.00[EUR][1000 genomes] |
| rs891003 | 1.00[EUR][1000 genomes] |
| rs9284963 | 1.00[EUR][1000 genomes] |
| rs9313094 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019579 | chr5:4557477-4997411 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1021653 | chr5:4932992-5201887 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:4930400-4937800 | Weak transcription | Fetal Muscle Leg | muscle |
| 2 | chr5:4931400-4935600 | Weak transcription | Adipose Nuclei | Adipose |
