Variant report

Variant	rs891002
Chromosome Location	chr5:4957131-4957132
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10041690	1.00[EUR][1000 genomes]
rs10042128	1.00[EUR][1000 genomes]
rs10072728	1.00[EUR][1000 genomes]
rs10074970	1.00[EUR][1000 genomes]
rs11949594	1.00[EUR][1000 genomes]
rs12108705	1.00[EUR][1000 genomes]
rs13354897	1.00[EUR][1000 genomes]
rs13360125	1.00[EUR][1000 genomes]
rs13360164	1.00[EUR][1000 genomes]
rs1551942	1.00[EUR][1000 genomes]
rs1651743	1.00[EUR][1000 genomes]
rs16874255	1.00[EUR][1000 genomes]
rs16874580	1.00[EUR][1000 genomes]
rs16874600	1.00[EUR][1000 genomes]
rs16874607	1.00[EUR][1000 genomes]
rs16874707	1.00[EUR][1000 genomes]
rs16874713	1.00[EUR][1000 genomes]
rs16874716	1.00[EUR][1000 genomes]
rs28392909	1.00[EUR][1000 genomes]
rs479124	1.00[EUR][1000 genomes]
rs55751833	1.00[EUR][1000 genomes]
rs56111006	1.00[EUR][1000 genomes]
rs56147613	1.00[EUR][1000 genomes]
rs57249853	1.00[EUR][1000 genomes]
rs58125360	1.00[EUR][1000 genomes]
rs59405131	1.00[EUR][1000 genomes]
rs595135	1.00[EUR][1000 genomes]
rs59746989	1.00[EUR][1000 genomes]
rs60511041	1.00[EUR][1000 genomes]
rs607839	1.00[EUR][1000 genomes]
rs61048069	1.00[EUR][1000 genomes]
rs6555330	1.00[EUR][1000 genomes]
rs670244	1.00[EUR][1000 genomes]
rs6868249	1.00[EUR][1000 genomes]
rs6868252	1.00[EUR][1000 genomes]
rs6873058	1.00[EUR][1000 genomes]
rs6886525	1.00[EUR][1000 genomes]
rs73738308	1.00[EUR][1000 genomes]
rs73738309	1.00[EUR][1000 genomes]
rs73738321	1.00[EUR][1000 genomes]
rs73738330	1.00[EUR][1000 genomes]
rs73738332	1.00[EUR][1000 genomes]
rs7720792	1.00[EUR][1000 genomes]
rs7725410	1.00[EUR][1000 genomes]
rs891003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9284963	1.00[EUR][1000 genomes]
rs9313094	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019579	chr5:4557477-4997411	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1021653	chr5:4932992-5201887	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1028717	chr5:4954566-4993583	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:4957000-4957200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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