Variant report

Variant	rs16876606
Chromosome Location	chr6:15551596-15551597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15545587..15549018-chr6:15549225..15553433,4	K562	blood:
2	chr6:15548804..15551756-chr6:15553738..15555396,2	K562	blood:
3	chr6:15551478..15555185-chr6:15568450..15571050,3	K562	blood:

Variant related genes	Relation type
ENSG00000047579	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16876561	1.00[AFR][1000 genomes]
rs16876668	1.00[AFR][1000 genomes]
rs16876690	1.00[AFR][1000 genomes]
rs16876732	1.00[AFR][1000 genomes]
rs56024085	1.00[AFR][1000 genomes]
rs57847117	1.00[AFR][1000 genomes]
rs73724431	1.00[AFR][1000 genomes]
rs73724432	1.00[AFR][1000 genomes]
rs73724440	1.00[AFR][1000 genomes]
rs73724459	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15525000-15553400	Weak transcription	Ovary	ovary
2	chr6:15534000-15551600	Weak transcription	Aorta	Aorta
3	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
4	chr6:15537000-15551600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:15537000-15551800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:15537000-15554400	Weak transcription	Fetal Intestine Large	intestine
7	chr6:15539800-15554000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:15540000-15551800	Weak transcription	Gastric	stomach
9	chr6:15544800-15551600	Weak transcription	Primary T cells from cord blood	blood
10	chr6:15545000-15554200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:15546600-15551600	Weak transcription	Lung	lung
12	chr6:15547400-15563200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:15547800-15551600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:15547800-15552000	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:15548000-15551800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:15548000-15551800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:15548000-15553800	Weak transcription	NHLF	lung
18	chr6:15548200-15551800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:15549600-15553600	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:15549800-15552000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:15549800-15552200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:15549800-15552400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:15549800-15552400	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:15549800-15552600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:15549800-15554000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr6:15549800-15554400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr6:15549800-15554400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:15550000-15552200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:15550000-15552400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:15550200-15551600	Weak transcription	GM12878-XiMat	blood
31	chr6:15550400-15551600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:15550400-15552400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:15550400-15556400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr6:15550600-15552200	Enhancers	Psoas Muscle	Psoas
35	chr6:15550600-15552400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:15550600-15552600	Enhancers	Fetal Heart	heart
37	chr6:15550600-15554400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:15550800-15551800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:15550800-15551800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:15550800-15552000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:15550800-15552400	Enhancers	Brain Hippocampus Middle	brain
42	chr6:15550800-15552400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr6:15550800-15552400	Enhancers	Fetal Muscle Leg	muscle
44	chr6:15550800-15552400	Enhancers	Right Ventricle	heart
45	chr6:15550800-15552600	Enhancers	Primary B cells from cord blood	blood
46	chr6:15550800-15552600	Enhancers	Fetal Stomach	stomach
47	chr6:15550800-15552600	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr6:15550800-15553000	Enhancers	Primary hematopoietic stem cells	blood
49	chr6:15550800-15553000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:15551000-15551800	Weak transcription	Fetal Intestine Small	intestine

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