Variant report

Variant	rs73724440
Chromosome Location	chr6:15580679-15580680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16876561	1.00[AFR][1000 genomes]
rs16876606	1.00[AFR][1000 genomes]
rs16876668	1.00[AFR][1000 genomes]
rs16876690	1.00[AFR][1000 genomes]
rs16876732	1.00[AFR][1000 genomes]
rs56024085	1.00[AFR][1000 genomes]
rs57847117	1.00[AFR][1000 genomes]
rs73724431	1.00[AFR][1000 genomes]
rs73724432	1.00[AFR][1000 genomes]
rs73724459	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15562200-15588800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:15563400-15604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:15564000-15586800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:15565400-15593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:15565800-15595800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:15567200-15593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:15570000-15581200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:15570200-15581000	Weak transcription	Left Ventricle	heart
10	chr6:15570400-15583400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:15571200-15593000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:15574000-15596800	Weak transcription	Fetal Intestine Small	intestine
13	chr6:15574800-15592400	Weak transcription	Dnd41	blood
14	chr6:15574800-15603600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:15575400-15592600	Weak transcription	Primary T cells from cord blood	blood
16	chr6:15576000-15596200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:15576400-15582000	Weak transcription	K562	blood
18	chr6:15577000-15581000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:15578400-15586000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:15578600-15586000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:15578600-15586800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:15578600-15596200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:15578800-15595800	Weak transcription	Aorta	Aorta
24	chr6:15580400-15580800	Strong transcription	Primary B cells from cord blood	blood
25	chr6:15580400-15581400	Enhancers	Monocytes-CD14+_RO01746	blood

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