Variant report

Variant	rs16876690
Chromosome Location	chr6:15609925-15609926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15608462..15611439-chr6:15612716..15614528,3	K562	blood:
2	chr6:15605789..15608312-chr6:15608861..15612211,4	K562	blood:
3	chr6:15608751..15610493-chr6:16133859..16135437,2	K562	blood:
4	chr6:15603223..15604780-chr6:15608414..15611076,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16876561	1.00[AFR][1000 genomes]
rs16876606	1.00[AFR][1000 genomes]
rs16876668	1.00[AFR][1000 genomes]
rs16876732	1.00[AFR][1000 genomes]
rs56024085	1.00[AFR][1000 genomes]
rs57847117	1.00[AFR][1000 genomes]
rs73724431	1.00[AFR][1000 genomes]
rs73724432	1.00[AFR][1000 genomes]
rs73724440	1.00[AFR][1000 genomes]
rs73724459	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15587000-15616200	Weak transcription	Pancreas	Pancrea
2	chr6:15589800-15610000	Weak transcription	GM12878-XiMat	blood
3	chr6:15589800-15614400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:15590400-15610000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:15593000-15611000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:15593000-15613800	Weak transcription	Gastric	stomach
7	chr6:15593200-15615800	Weak transcription	HepG2	liver
8	chr6:15593600-15611000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:15593800-15621800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:15594000-15612800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:15594000-15616200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:15594000-15621800	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:15594000-15626600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:15594200-15610000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:15594400-15610000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:15594600-15614600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:15596000-15611400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:15596000-15614400	Weak transcription	Lung	lung
19	chr6:15596200-15614200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:15596400-15610000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:15596400-15610000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:15596400-15611200	Weak transcription	HSMMtube	muscle
23	chr6:15596400-15616600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:15596400-15621000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:15596400-15621800	Weak transcription	Brain Angular Gyrus	brain
26	chr6:15596600-15621800	Weak transcription	Ovary	ovary
27	chr6:15596800-15621800	Weak transcription	Brain Anterior Caudate	brain
28	chr6:15597000-15610000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:15597000-15610000	Weak transcription	Fetal Lung	lung
30	chr6:15597000-15612800	Weak transcription	Placenta	Placenta
31	chr6:15597000-15614200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:15597000-15621600	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:15597000-15641600	Weak transcription	Spleen	Spleen
34	chr6:15597200-15610600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:15597200-15611000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:15597200-15612600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:15597800-15618400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:15599600-15616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
40	chr6:15601000-15621800	Weak transcription	Liver	Liver
41	chr6:15601200-15610000	Weak transcription	Fetal Intestine Large	intestine
42	chr6:15601400-15610000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr6:15601400-15613600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:15602800-15614200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr6:15602800-15615800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:15603200-15612800	Weak transcription	K562	blood
47	chr6:15603200-15616000	Weak transcription	Fetal Kidney	kidney
48	chr6:15604000-15612400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:15604000-15616000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr6:15604600-15616000	Weak transcription	H1 Cell Line	embryonic stem cell

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