Variant report

Variant	rs56024085
Chromosome Location	chr6:15677555-15677556
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16876561	1.00[AFR][1000 genomes]
rs16876606	1.00[AFR][1000 genomes]
rs16876668	1.00[AFR][1000 genomes]
rs16876690	1.00[AFR][1000 genomes]
rs16876732	1.00[AFR][1000 genomes]
rs57847117	1.00[AFR][1000 genomes]
rs73724431	1.00[AFR][1000 genomes]
rs73724432	1.00[AFR][1000 genomes]
rs73724440	1.00[AFR][1000 genomes]
rs73724459	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3692888	chr6:15675641-15694811	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15675800-15678200	Weak transcription	K562	blood
2	chr6:15675800-15678600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:15675800-15685000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:15675800-15685000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:15676400-15678600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:15676600-15678600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:15676600-15678800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:15676600-15678800	Weak transcription	Fetal Intestine Large	intestine
9	chr6:15676600-15680400	Weak transcription	Psoas Muscle	Psoas
10	chr6:15676600-15682000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:15676600-15683200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:15676800-15682000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:15677400-15678600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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