Variant report

Variant	rs16877167
Chromosome Location	chr6:15879121-15879122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
2	chr6:15872228..15874969-chr6:15877326..15879276,3	K562	blood:
3	chr6:15878294..15879855-chr6:16128144..16130607,2	MCF-7	breast:
4	chr6:15877644..15879393-chr6:15883432..15885191,2	K562	blood:
5	chr6:15876663..15879393-chr6:15883432..15885018,2	K562	blood:
6	chr6:15856687..15858368-chr6:15877449..15879540,2	K562	blood:
7	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:
8	chr6:15878944..15881534-chr6:16131445..16134111,2	K562	blood:
9	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:
10	chr6:15871704..15874710-chr6:15878937..15881687,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs34348178	0.82[AMR][1000 genomes]
rs55837325	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs58552036	0.87[AMR][1000 genomes]
rs58586550	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61228329	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72823486	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs72823487	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs72823488	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs72823494	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72823501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825614	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72825623	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72825630	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72825635	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72825636	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72825638	1.00[AFR][1000 genomes]
rs72825643	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825644	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15872200-15879400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:15872600-15879200	Weak transcription	Adipose Nuclei	Adipose
4	chr6:15873600-15879400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:15875000-15879400	Weak transcription	NHLF	lung
6	chr6:15875000-15880000	Weak transcription	Psoas Muscle	Psoas
7	chr6:15875600-15882400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:15876400-15882200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:15876600-15879600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:15876600-15882000	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:15876600-15882200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:15876800-15879800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:15877200-15879200	Weak transcription	NHDF-Ad	bronchial
14	chr6:15877200-15879400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:15877200-15879400	Weak transcription	GM12878-XiMat	blood
16	chr6:15877200-15879600	Weak transcription	HUVEC	blood vessel
17	chr6:15877200-15879800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:15878400-15879200	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:15878600-15879800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:15878800-15879600	Enhancers	Placenta	Placenta
21	chr6:15879000-15880600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:15879000-15881600	Weak transcription	Lung	lung
23	chr6:15879000-15882200	Enhancers	Primary B cells from peripheral blood	blood

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