Variant report

Variant	rs72825643
Chromosome Location	chr6:15907229-15907230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15894477..15896560-chr6:15907107..15909590,2	MCF-7	breast:
2	chr6:15906619..15910690-chr6:16127515..16130583,3	MCF-7	breast:
3	chr6:15763498..15765929-chr6:15906777..15908450,2	MCF-7	breast:
4	chr6:15904972..15907971-chr6:15936573..15939321,3	K562	blood:
5	chr6:15904841..15911387-chr6:16127865..16132183,18	K562	blood:
6	chr6:15907017..15909821-chr6:15918097..15920642,2	K562	blood:
7	chr6:15769393..15771029-chr6:15905967..15908693,2	MCF-7	breast:
8	chr6:15898536..15902063-chr6:15905932..15909819,5	K562	blood:
9	chr6:15906496..15909467-chr6:16138349..16140089,2	K562	blood:
10	chr6:15906805..15909911-chr6:15918758..15922441,3	MCF-7	breast:
11	chr6:15905196..15908263-chr6:15984889..15987796,3	K562	blood:
12	chr6:15905525..15908697-chr6:16128021..16130958,3	MCF-7	breast:
13	chr6:15905879..15907847-chr6:20402155..20403710,2	K562	blood:
14	chr6:15895394..15897101-chr6:15905785..15908150,2	K562	blood:
15	chr6:15904710..15908298-chr6:16128127..16132826,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112242	Chromatin interaction
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12332932	0.80[ASN][1000 genomes]
rs16877167	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs16877335	0.80[ASN][1000 genomes]
rs16877356	0.85[ASN][1000 genomes]
rs28374372	0.87[ASN][1000 genomes]
rs28439195	0.87[ASN][1000 genomes]
rs28675672	0.87[ASN][1000 genomes]
rs34348178	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55837325	1.00[AFR][1000 genomes]
rs58552036	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58586550	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61228329	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6931813	0.85[ASN][1000 genomes]
rs6932716	0.85[ASN][1000 genomes]
rs72823486	1.00[AFR][1000 genomes]
rs72823487	1.00[AFR][1000 genomes]
rs72823488	1.00[AFR][1000 genomes]
rs72823494	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72823501	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825606	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825608	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825611	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72825623	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72825630	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72825635	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72825636	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72825638	1.00[AFR][1000 genomes]
rs72825644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73370392	0.80[ASN][1000 genomes]
rs73370398	0.80[ASN][1000 genomes]
rs73372206	0.80[ASN][1000 genomes]
rs7739957	0.85[ASN][1000 genomes]
rs7754622	0.83[ASN][1000 genomes]
rs9476982	0.85[ASN][1000 genomes]
rs9476983	0.80[ASN][1000 genomes]
rs9476984	0.80[ASN][1000 genomes]
rs9476987	0.85[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
2	chr6:15900400-15908000	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:15902400-15907800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:15902400-15908400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:15902600-15907400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:15904600-15908000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:15904600-15908600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:15904800-15911600	Enhancers	Placenta	Placenta
9	chr6:15904800-15913600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:15905000-15911000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:15905200-15907400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:15906200-15908200	Weak transcription	Fetal Intestine Large	intestine
13	chr6:15906200-15910400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:15906400-15912000	Weak transcription	Adipose Nuclei	Adipose
15	chr6:15906600-15908000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:15906600-15908000	Weak transcription	Fetal Intestine Small	intestine
17	chr6:15906600-15908200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:15906600-15912200	Weak transcription	Spleen	Spleen
19	chr6:15906800-15907800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:15906800-15908000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:15906800-15908000	Enhancers	K562	blood
22	chr6:15906800-15910200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:15906800-15910600	Enhancers	GM12878-XiMat	blood
24	chr6:15906800-15912200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:15907000-15908000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:15907000-15908000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:15907000-15908200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:15907000-15908400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:15907000-15908400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:15907000-15908400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr6:15907000-15908800	Weak transcription	Fetal Lung	lung
32	chr6:15907000-15909400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:15907000-15912000	Weak transcription	Fetal Kidney	kidney
34	chr6:15907000-15912200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:15907000-15912200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:15907200-15907600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:15907200-15907600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:15907200-15908400	Weak transcription	Esophagus	oesophagus

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