Variant report

Variant	rs9476983
Chromosome Location	chr6:15927678-15927679
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15921762..15925061-chr6:15925136..15927911,3	MCF-7	breast:
2	chr6:15918087..15920599-chr6:15926761..15928531,2	K562	blood:
3	chr6:15926509..15928201-chr6:15942706..15945656,2	K562	blood:
4	chr6:15921346..15923754-chr6:15927651..15930259,4	K562	blood:
5	chr6:15898688..15901533-chr6:15925410..15927888,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12332932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877320	1.00[CEU][hapmap]
rs16877335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877356	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs28374372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28439195	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28675672	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34348178	0.93[ASN][1000 genomes]
rs6931813	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6932716	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72825643	0.80[ASN][1000 genomes]
rs72825644	0.80[ASN][1000 genomes]
rs73370392	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73370398	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73372206	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739957	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7754622	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9476982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476984	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15921600-15929400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:15926000-15931000	Weak transcription	Aorta	Aorta
3	chr6:15926400-15928000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:15926600-15927800	Enhancers	Psoas Muscle	Psoas
5	chr6:15926600-15928200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:15926600-15929400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:15926600-15930000	Enhancers	Placenta	Placenta
8	chr6:15927400-15927800	Enhancers	Spleen	Spleen
9	chr6:15927400-15928000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:15927600-15928400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:15927600-15929000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:15927600-15930200	Enhancers	Primary neutrophils fromperipheralblood	blood

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