Variant report

Variant	rs16877356
Chromosome Location	chr6:15936579-15936580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12332932	1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs16877335	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[ASN][1000 genomes]
rs28374372	0.99[ASN][1000 genomes]
rs28439195	0.99[ASN][1000 genomes]
rs28675672	0.99[ASN][1000 genomes]
rs34348178	0.99[ASN][1000 genomes]
rs6931813	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs6932716	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs72825643	0.85[ASN][1000 genomes]
rs72825644	0.85[ASN][1000 genomes]
rs73370392	0.95[ASN][1000 genomes]
rs73370398	0.95[ASN][1000 genomes]
rs73372206	0.95[ASN][1000 genomes]
rs7739957	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs7754622	0.97[ASN][1000 genomes]
rs9476982	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476983	0.95[ASN][1000 genomes]
rs9476984	0.95[ASN][1000 genomes]
rs9476987	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970079	chr6:15935054-15936602	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15935000-15936800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:15936000-15937000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:15936000-15937600	Enhancers	GM12878-XiMat	blood
4	chr6:15936000-15937800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:15936000-15938200	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:15936200-15937400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:15936200-15937800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:15936400-15937400	Enhancers	Primary B cells from cord blood	blood
9	chr6:15936400-15937600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:15936400-15937600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:15936400-15951200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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