Variant report

Variant	rs72825644
Chromosome Location	chr6:15908519-15908520
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15894477..15896560-chr6:15907107..15909590,2	MCF-7	breast:
2	chr6:15854561..15856681-chr6:15908363..15910896,2	K562	blood:
3	chr6:15906619..15910690-chr6:16127515..16130583,3	MCF-7	breast:
4	chr6:15908228..15908960-chr6:16128688..16129489,2	MCF-7	breast:
5	chr6:15904841..15911387-chr6:16127865..16132183,18	K562	blood:
6	chr6:15907017..15909821-chr6:15918097..15920642,2	K562	blood:
7	chr6:15907905..15909832-chr6:16133533..16135253,2	K562	blood:
8	chr6:15769393..15771029-chr6:15905967..15908693,2	MCF-7	breast:
9	chr6:15898536..15902063-chr6:15905932..15909819,5	K562	blood:
10	chr6:15906496..15909467-chr6:16138349..16140089,2	K562	blood:
11	chr6:15906805..15909911-chr6:15918758..15922441,3	MCF-7	breast:
12	chr6:15907286..15909989-chr6:15915065..15917372,2	MCF-7	breast:
13	chr6:15905525..15908697-chr6:16128021..16130958,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12332932	0.80[ASN][1000 genomes]
rs16877167	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs16877335	0.80[ASN][1000 genomes]
rs16877356	0.85[ASN][1000 genomes]
rs28374372	0.87[ASN][1000 genomes]
rs28439195	0.87[ASN][1000 genomes]
rs28675672	0.87[ASN][1000 genomes]
rs34348178	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55837325	1.00[AFR][1000 genomes]
rs58552036	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58586550	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61228329	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6931813	0.85[ASN][1000 genomes]
rs6932716	0.85[ASN][1000 genomes]
rs72823486	1.00[AFR][1000 genomes]
rs72823487	1.00[AFR][1000 genomes]
rs72823488	1.00[AFR][1000 genomes]
rs72823494	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72823501	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825606	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825608	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825611	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72825623	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72825630	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72825635	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72825636	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72825638	1.00[AFR][1000 genomes]
rs72825643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73370392	0.80[ASN][1000 genomes]
rs73370398	0.80[ASN][1000 genomes]
rs73372206	0.80[ASN][1000 genomes]
rs7739957	0.85[ASN][1000 genomes]
rs7754622	0.83[ASN][1000 genomes]
rs9476982	0.85[ASN][1000 genomes]
rs9476983	0.80[ASN][1000 genomes]
rs9476984	0.80[ASN][1000 genomes]
rs9476987	0.85[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
2	chr6:15904600-15908600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15904800-15911600	Enhancers	Placenta	Placenta
4	chr6:15904800-15913600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:15905000-15911000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:15906200-15910400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:15906400-15912000	Weak transcription	Adipose Nuclei	Adipose
8	chr6:15906600-15912200	Weak transcription	Spleen	Spleen
9	chr6:15906800-15910200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:15906800-15910600	Enhancers	GM12878-XiMat	blood
11	chr6:15906800-15912200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:15907000-15908800	Weak transcription	Fetal Lung	lung
13	chr6:15907000-15909400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:15907000-15912000	Weak transcription	Fetal Kidney	kidney
15	chr6:15907000-15912200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:15907000-15912200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:15907400-15908800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:15907600-15911000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:15907600-15911000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:15907800-15908600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:15907800-15908800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:15907800-15911000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:15908000-15908800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:15908000-15909000	Flanking Active TSS	K562	blood
25	chr6:15908000-15909400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr6:15908000-15910200	Enhancers	Fetal Intestine Small	intestine
27	chr6:15908000-15910800	Enhancers	H9 Cell Line	embryonic stem cell
28	chr6:15908000-15910800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:15908000-15912800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:15908200-15908800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:15908200-15909200	Enhancers	Fetal Intestine Large	intestine
32	chr6:15908200-15912600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr6:15908400-15908800	Enhancers	Duodenum Mucosa	Duodenum
34	chr6:15908400-15909000	Enhancers	Stomach Mucosa	stomach
35	chr6:15908400-15909200	Enhancers	Esophagus	oesophagus
36	chr6:15908400-15909200	Enhancers	NHEK	skin
37	chr6:15908400-15910400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:15908400-15910600	Enhancers	H1 Cell Line	embryonic stem cell
39	chr6:15908400-15912400	Weak transcription	Monocytes-CD14+_RO01746	blood

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