Variant report

Variant	rs72825614
Chromosome Location	chr6:15880619-15880620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
2	chr6:15875079..15877964-chr6:15880093..15881980,2	K562	blood:
3	chr6:15871773..15874343-chr6:15880134..15881687,2	K562	blood:
4	chr6:15880603..15882867-chr6:15885643..15887252,2	K562	blood:
5	chr6:15879420..15881947-chr6:15888551..15890948,2	MCF-7	breast:
6	chr6:15879446..15881923-chr6:15881943..15885281,3	K562	blood:
7	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:
8	chr6:15878944..15881534-chr6:16131445..16134111,2	K562	blood:
9	chr6:15684844..15687441-chr6:15880155..15881679,2	K562	blood:
10	chr6:15871704..15874710-chr6:15878937..15881687,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16877167	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34348178	0.86[AMR][1000 genomes]
rs55837325	1.00[AFR][1000 genomes]
rs58552036	0.91[AMR][1000 genomes]
rs58586550	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs61228329	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72823486	1.00[AFR][1000 genomes]
rs72823487	1.00[AFR][1000 genomes]
rs72823488	1.00[AFR][1000 genomes]
rs72823494	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72823501	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72825606	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72825608	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72825611	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72825623	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825630	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825635	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825636	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72825638	1.00[AFR][1000 genomes]
rs72825643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72825644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15875600-15882400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15876400-15882200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:15876600-15882000	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:15876600-15882200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:15879000-15881600	Weak transcription	Lung	lung
7	chr6:15879000-15882200	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:15879200-15880800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:15879200-15880800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:15879200-15880800	Enhancers	Colon Smooth Muscle	Colon
11	chr6:15879200-15880800	Enhancers	Fetal Lung	lung
12	chr6:15879200-15880800	Enhancers	Fetal Muscle Leg	muscle
13	chr6:15879200-15881000	Enhancers	Adipose Nuclei	Adipose
14	chr6:15879200-15881000	Enhancers	NHDF-Ad	bronchial
15	chr6:15879400-15880800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:15879400-15880800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:15879400-15880800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr6:15879400-15880800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr6:15879400-15880800	Enhancers	Fetal Stomach	stomach
20	chr6:15879400-15880800	Enhancers	Rectal Smooth Muscle	rectum
21	chr6:15879400-15880800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr6:15879400-15881000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:15879600-15880800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:15879600-15880800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:15879600-15880800	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr6:15879600-15880800	Enhancers	Fetal Kidney	kidney
27	chr6:15879600-15880800	Enhancers	Dnd41	blood
28	chr6:15879600-15881000	Enhancers	HUVEC	blood vessel
29	chr6:15879800-15880800	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr6:15879800-15880800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:15879800-15880800	Enhancers	Placenta Amnion	Placenta Amnion
32	chr6:15879800-15880800	Enhancers	Thymus	Thymus
33	chr6:15879800-15881000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr6:15879800-15882000	Enhancers	K562	blood
35	chr6:15880000-15880800	Enhancers	Primary T cells fromperipheralblood	blood
36	chr6:15880000-15880800	Enhancers	Fetal Heart	heart
37	chr6:15880000-15880800	Enhancers	Psoas Muscle	Psoas
38	chr6:15880000-15880800	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr6:15880000-15881000	Enhancers	Primary B cells from cord blood	blood
40	chr6:15880000-15881000	Enhancers	Spleen	Spleen
41	chr6:15880000-15882000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:15880000-15882000	Enhancers	Placenta	Placenta
43	chr6:15880000-15882000	Enhancers	NHEK	skin
44	chr6:15880200-15880800	Enhancers	Brain Angular Gyrus	brain
45	chr6:15880200-15880800	Enhancers	Brain Cingulate Gyrus	brain
46	chr6:15880200-15880800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:15880400-15880800	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr6:15880400-15880800	Enhancers	Brain Substantia Nigra	brain
49	chr6:15880400-15880800	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr6:15880400-15880800	Enhancers	HMEC	breast

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