Variant report

Variant	rs16877898
Chromosome Location	chr5:59606247-59606248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10514893	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs10514894	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs1423471	1.00[CEU][hapmap]
rs16877896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16877901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs16877933	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs16877936	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs16877964	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs16877967	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16878035	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs16878037	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs16878086	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs16878104	1.00[CEU][hapmap]
rs16878106	1.00[CEU][hapmap]
rs17326404	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17378750	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1862589	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs3763059	1.00[CEU][hapmap]
rs4090603	1.00[CEU][hapmap]
rs4130444	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4580738	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56247947	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56262275	0.84[EUR][1000 genomes]
rs57177718	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58512371	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58594585	0.88[EUR][1000 genomes]
rs58704174	0.84[EUR][1000 genomes]
rs59014679	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59576667	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59578756	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60962155	0.81[EUR][1000 genomes]
rs61474228	0.81[EUR][1000 genomes]
rs6865762	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6878429	1.00[CEU][hapmap]
rs6881782	0.88[EUR][1000 genomes]
rs6886423	0.81[EUR][1000 genomes]
rs702552	1.00[YRI][hapmap]
rs73106775	0.92[ASN][1000 genomes]
rs73106780	0.81[ASN][1000 genomes]
rs73106781	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73106782	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73108627	0.84[EUR][1000 genomes]
rs73108631	0.84[EUR][1000 genomes]
rs7702188	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7707365	0.92[ASN][1000 genomes]
rs7723861	1.00[CEU][hapmap]
rs7725629	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links