Variant report

Variant	rs58704174
Chromosome Location	chr5:59655235-59655236
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10514893	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514894	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16877933	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16877936	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16877964	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16877967	0.96[EUR][1000 genomes]
rs16878035	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16878037	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16878086	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17326404	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17378750	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1862589	0.89[EUR][1000 genomes]
rs1895412	0.96[ASN][1000 genomes]
rs4130444	0.84[EUR][1000 genomes]
rs4580738	0.84[EUR][1000 genomes]
rs55952213	0.92[EUR][1000 genomes]
rs56151644	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56217581	0.89[EUR][1000 genomes]
rs56247947	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56262275	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57177718	1.00[EUR][1000 genomes]
rs58376959	0.89[EUR][1000 genomes]
rs58512371	1.00[EUR][1000 genomes]
rs58594585	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58891299	0.89[EUR][1000 genomes]
rs59014679	1.00[EUR][1000 genomes]
rs59576667	1.00[EUR][1000 genomes]
rs59578756	1.00[EUR][1000 genomes]
rs60104228	0.89[EUR][1000 genomes]
rs60962155	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61474228	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6881782	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6886423	0.96[EUR][1000 genomes]
rs73106781	1.00[EUR][1000 genomes]
rs73106782	1.00[EUR][1000 genomes]
rs73108618	0.82[ASN][1000 genomes]
rs73108627	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73108631	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73759052	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73759053	0.89[EUR][1000 genomes]
rs7702188	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7725629	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59647000-59655600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:59647200-59658000	Weak transcription	Hela-S3	cervix
3	chr5:59647200-59694200	Weak transcription	Primary B cells from cord blood	blood
4	chr5:59649400-59668200	Weak transcription	Gastric	stomach
5	chr5:59650400-59657600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:59650400-59674800	Weak transcription	Aorta	Aorta
7	chr5:59650800-59657400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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