Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10514893	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10514894	0.82[ASN][1000 genomes]
rs1345782	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16877933	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16877936	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16877964	0.94[ASN][1000 genomes]
rs16877967	0.94[ASN][1000 genomes]
rs17326404	0.88[ASN][1000 genomes]
rs17378750	0.94[ASN][1000 genomes]
rs1895412	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56262275	0.95[ASN][1000 genomes]
rs58594585	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs58704174	0.82[ASN][1000 genomes]
rs60962155	0.91[ASN][1000 genomes]
rs61474228	0.89[ASN][1000 genomes]
rs6860277	0.89[ASN][1000 genomes]
rs6881782	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6886304	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6886423	0.81[ASN][1000 genomes]
rs73108627	0.95[ASN][1000 genomes]
rs73108631	0.95[ASN][1000 genomes]
rs73759054	0.90[EUR][1000 genomes]
rs7702188	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59647200-59694200	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59650400-59674800	Weak transcription	Aorta	Aorta
3	chr5:59662600-59680200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:59667800-59669400	Enhancers	Stomach Mucosa	stomach
5	chr5:59667800-59670800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:59668000-59670400	Enhancers	HepG2	liver
7	chr5:59668200-59669400	Enhancers	A549	lung
8	chr5:59668400-59669800	Weak transcription	Pancreas	Pancrea

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